Merge pull request #735 from CEED/jeremy/style-guide

Style Unification

style - updating C variable style

Merge pull request #716 from CEED/jed/install-backend.h

Jed/install backend.h

Install install backend headers under include/ceed/

This makes it possible to distribute source plugins that provide
additional backends. It's also used in MFEM, perhaps temporarily.

Deprecate ceed

Install install backend headers under include/ceed/

This makes it possible to distribute source plugins that provide
additional backends. It's also used in MFEM, perhaps temporarily.

Deprecate ceed-backend.h, which was not previously installed, but some
users accessed it from an in-place build.

Also install CUDA and HIP headers that allow users to provide CUfunction
and hipFunction_t.

Co-authored-by: Jeremy L. Thompson <jeremy.thompson@colorado.edu>
Requested-by: Andrew T. Barker <barker29@llnl.gov>

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Full assembly of CeedOperator (#712)

* Add CeedOperatorLinearFullAssemble() to explicitly assemble a CeedOperator

The output format is a stream of (row, column, value) triples, which client
code

Full assembly of CeedOperator (#712)

* Add CeedOperatorLinearFullAssemble() to explicitly assemble a CeedOperator

The output format is a stream of (row, column, value) triples, which client
code can use to assemble a sparse matrix by adding the values in the
appropriate places.

* Add full assembly test for triangular mesh, t563-operator.c, which is analogous to t536-operator.c

* assembly: change interface to separate nonzero structure from values

* assembly: add potential backends for CeedOperatorLinearAssemble, CeedOperatorLinearAssemblySymbolic

* assembly: use CeedMatrixMultiply() instead of hand-rolled duplicated code

This also involves switching some arrays from column-major ordering to
row-major ordering.

* Remove CeedMatrixMultiply from ceed-impl.h because it is already in ceed-backend.h

* assembly: modify use of fallback resource

* operator - use new error codes in full assembly

* style - minor

* operator - switch default fallback to none

* operator - fix fallback for full assembly

* operator - fix fallback usage

* operator - fix fallback for digonal assembly

* avx - revert bug

* avx - revert bug

Co-authored-by: jeremylt <thompson.jeremy.luke@gmail.com>

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Error Handling Improvement [fix #696] (#691)

* Operator - add operator/qfunction field compatibility checks

* QFunction - do not allow adding fields to QFunction in use with an operator

* Exam

Error Handling Improvement [fix #696] (#691)

* Operator - add operator/qfunction field compatibility checks

* QFunction - do not allow adding fields to QFunction in use with an operator

* Examples - add some extra exclusion markers in ceed example

* error - add error enum

* error - update error enum names and numbering

* error - use CEED_ERROR_BACKEND in all backend errors

* error - begin classifying interface errors

* error - update backends to use CEED_ERROR_SUCCESS and CeedChkBackend

* error - use new errors in gallery

* error - add some unsaved modifications

* error - improve documentation

* error - define CEED_ERROR_SUCCESS in GPU JiT; we really should have a common header to pipe defines to the JiT code

* error - more error code editing

* error - fix error string

* operator - fix setting field qpts

* basis - add input/output dimension error checking

* python - move basis utility methods to ceed object, no basis required or used

* python - force exit with negative error code

* make style-py

* rust - initial work to add error handling logic

* rust - add ceed.resource method

* rust - add results for methods that may fail

* rust - also format doctests

* minor - drop unused CeedChk()

* error - rename terminal/nonterminal to major/minor

* rust - set ErrorStore as default errorhandler

* python - revert error handing change for python

* python - use success error code from C bindings

* error - only upgrade error code in backend if positive

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headers - clearify includes to not rely on transitive includes (#701)

* headers - clearify includes to not rely on transitive includes

* style - add header recommendations from 'include-what-you-

headers - clearify includes to not rely on transitive includes (#701)

* headers - clearify includes to not rely on transitive includes

* style - add header recommendations from 'include-what-you-use'

* style - apply 'include-what-you-use' changes to CUDA backends

* style - 'include-what-you-use' for hip backends

* style - drop ceed.h includes in gallery qf source

* docs - add dev notes for header files

* style - header style and alphabetize

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Merge pull request #674 from CEED/jed/static-link

static link

Add static library (libceed.a) [resolve #670]

We no longer use __attribute__((constructor)) to register backends and
gallery implementations because we can't ensure that the symbols are
linked into

Add static library (libceed.a) [resolve #670]

We no longer use __attribute__((constructor)) to register backends and
gallery implementations because we can't ensure that the symbols are
linked into applications that link the static library. We've switched to
creating CeedRegisterAll() and CeedQFunctionRegisterAll(), which are
called automatically by the library, and call weak symbols to register
all the backend/gallery implementations. This strategy was partly
motivated by not wanting to have preprocessor macros describing what is
available, and the associated need to recompile rather than just relink
when those macros change.

So we now have backends/ceed-backend-list.h that declares all the
backends wrapped in a macro. It is included by
backends/ceed-backend-weak.c to create weak definitions of all the
backends. In the makefile, we sort so this comes last when linking a
shared or static library, and thus these weak symbols will only be
picked up if they were not defined by the actual backend source files.
The same header is included (with different macro wrapping) in
interface/ceed-register.c, where CeedRegisterAll() is defined.

To add a new backend, one must do essentially the same registration
strategy as in the past, plus add one line to the common
ceed-backend-list.h.

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QFunction Context Data Object (#596)

* Ctx - create context object for QFunction context data

* Context - rename UserContext -> QFunctionContext

* Ctx - add lcov markers

* Ctx - fix leak in

QFunction Context Data Object (#596)

* Ctx - create context object for QFunction context data

* Context - rename UserContext -> QFunctionContext

* Ctx - add lcov markers

* Ctx - fix leak in identity QFunctions

* Hip/Cuda - rename sync functions for vector/context

* Tests - lcov marker update

* QFunction - drop unused function

* Python - fix copy-paste errors

* Ctx - update notes for Fortran usage

* Fortran - drop unneeded cast

Co-authored-by: Jed Brown <jed@jedbrown.org>

* Interface - use void* for SetData interfaces

* Make - use call quiet for NVCC

* Interface - use void* for GetData interfaces

* Make - add quiet call option for examples

* Makefile - create common makefile to reduce duplication/complexity in example makefiles

Co-authored-by: Jed Brown <jed@jedbrown.org>

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Merge branch 'main' into natalie/hip-ref-v2

Merge pull request #561 from CEED/jeremy/is-deterministic

Ceed - add IsDeterministic

spellcheck

Ceed - add IsDeterministic

Merge pull request #431 from CEED/jeremy/diag-refactor

Operator - move AssembleDiagonal to fallback

CPU - add comment blocks at top of all backend functions

Codecov Exceptions (#356)

* Tests - Add lcov exceptions to t304-f/t305-f

* Backends - add lcov exceptions for error messages intentionally not tested

* Interface - add lcov exceptions for erro

Codecov Exceptions (#356)

* Tests - Add lcov exceptions to t304-f/t305-f

* Backends - add lcov exceptions for error messages intentionally not tested

* Interface - add lcov exceptions for error messages intentionally not tested

* Tests - additional lcov exceptions

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Merge pull request #295 from CEED/cpu_priority_fix

BugFix - Resource strcmp in LIBXSMM backends

Update CPU backends to give default for /cpu/self/***

Merge pull request #239 from CEED/decorator

Add delegates for specific objects

Update Ceed Delegate refrencing

Merge pull request #228 from CEED/rstr-block

Restriction Block

Use blocking in optimized serial backends