Merge pull request #1426 from CEED/jeremy/trailing

Fix trailing spaces in non-linted files

style - fix trailing spaces in non-linted files

Merge pull request #1270 from CEED/jeremy/constantinople

Rename CEED_BASIS_COLLOCATED to CEED_BASIS_NONE

interface - rename CEED_BASIS_COLLOCATED to CEED_BASIS_NONE

Merge pull request #877 from CEED/jeremy/field-names-for-people

Make qf/op field names human readable

style - make qf/op field names human readable

vec/qf - initial valid/borrowed/owned split for data (#853)

* vec/qf - initial valid/borrowed/owned split for data

* vec/qf - tidy logic for checking active/stale data

* minor - add missing NU

vec/qf - initial valid/borrowed/owned split for data (#853)

* vec/qf - initial valid/borrowed/owned split for data

* vec/qf - tidy logic for checking active/stale data

* minor - add missing NULL

* doc - explain VectorTakeArray update

* minor - update error messages

* test - update error message in junit/tap

* gpu - fix stray CeedScalar vs void for QFunctionContext

* vec/qf - clarify/simplify access logic

* vec - calloc host arrays when no value set to make empty

* style - minor

* style - minor

* minor - fix error messages

* vec/qf - move data validity checking to backend interface

* gpu - add missing sync error checking for qfcontext

* gpu - homogonize use of impl for backend data to reduce confusion

* vec - clarify access conditions

* python - update test for stricter vector access

* vec - minor fixes

* minor - fix ipython change

* vec - add missing declarations in ceed/backend.h

* ctx - mirror vector borrowed data check in ctx interface

* vec - add CeedVectorGetArrayWrite

* vec - consistent use of CeedVectorGetArray vs CeedVectorGetArrayWrite

* python - small vec fixes

* doc - describe vector data semantics

* magma - update restriction

* gpu - fix restr bug I added, need to sum into target

* magma - fix restriction bug

* cpu - fix restriction bug here too

* op - fix evec allocations

* julia - fix ElemRestriction for new vector access rules

* op - double check GetArray vs Read vs Write usage

* doc - small fix

* restr - clean up read/write logic for restr

* python - add vec.array_write

* magma - typo fix

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Merge pull request #716 from CEED/jed/install-backend.h

Jed/install backend.h

Install install backend headers under include/ceed/

This makes it possible to distribute source plugins that provide
additional backends. It's also used in MFEM, perhaps temporarily.

Deprecate ceed

Install install backend headers under include/ceed/

This makes it possible to distribute source plugins that provide
additional backends. It's also used in MFEM, perhaps temporarily.

Deprecate ceed-backend.h, which was not previously installed, but some
users accessed it from an in-place build.

Also install CUDA and HIP headers that allow users to provide CUfunction
and hipFunction_t.

Co-authored-by: Jeremy L. Thompson <jeremy.thompson@colorado.edu>
Requested-by: Andrew T. Barker <barker29@llnl.gov>

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Fix CodeCov Reports (#597)

* Tests - use qfunction headers for Fortran tests to improve bypass gcov issue

* Gitlab - use latest gcc on Noether

* Cuda/Hip - add case in reciprocal for completen

Fix CodeCov Reports (#597)

* Tests - use qfunction headers for Fortran tests to improve bypass gcov issue

* Gitlab - use latest gcc on Noether

* Cuda/Hip - add case in reciprocal for completeness

* Cuda - remove duplicate case

* Makefile - exclude fortran test headers from make style

* Travis - update to Focal

* Cov - adjust style to be consistent and avoid false misses

* Travis - update comments and style

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Merge branch 'master' into valeria/NSfixes

Merge pull request #513 from CEED/jeremy/restriction-no-interlace

Convert restriction to offsets

Restriction - convert restiction to use offsets instead of interlace mode. CPU and Python impl only, CUDA and MAGMA left to do.

Merge pull request #456 from CEED/jeremy/strided-restriction

Strided Restrictions

ElemRestriction - add CEED_ELEMRESTRICTION_NONE so we can stop making dummy restrictions for CEED_EVAL_WEIGHT fields

Restriction - replace identity restrictions with strided restrictions

Merge pull request #447 from CEED/jeremy/lmode-on-create

ElemRestriction Lmode in Create over Apply

ElemRestriction - make lmode a separate enum

ElemRestriction - move lmode to constructor over apply

Merge pull request #417 from CEED/jeremy/none-args

None Args

Operator - add QFUNCTION_NONE

Merge pull request #344 from CEED/jeremy/ifort-fix

Fortran - Use preprocessor directive to provide abs path to true qfuntion source
resolves Issue #71

Fortran - Use preprocessor directive to provide abs path to true qfunction source

Single Source QFunction (#304)

Introduce a new macro CEED_QFUNCTION that allows to define qFunctions in a single source code independently of the targeted backend.

Thanks-to: Jeremy Thompson
Tha

Single Source QFunction (#304)

Introduce a new macro CEED_QFUNCTION that allows to define qFunctions in a single source code independently of the targeted backend.

Thanks-to: Jeremy Thompson
Thanks-to: Jed Brown
This work is the result of a fruitful discussion between Jed Brown, Jeremy Thompson and Yohann Dudouit. Jeremy Thompson also implemented important features in this commit and was very active and helpful all along the progress of this work.

[NEWS] Breaking change: QFunctionField parameter 'ncomp' changed to 'size'. This change requires setting the previous value of 'ncomp' to 'ncomp*dim' when adding a QFunctionField with eval mode 'CEED_EVAL_GRAD'.

* First steps toward cuda-gen backend!

* Closer to real code generation.

* Generated code should be ready for nvrtc.

* The code generation skeleton is ready.

* Hack with the qfunction to make the operator kernel compile.

* Some tweaks in the makefile + Input fields structure change.

* Remove using cout.

* 1d interp and grad device functions.

* 1d readDofs, readQuads, writeDofs, writeQuads.

* Remove dead code.

* readDofs, readQuads, writeDofs, writeQuads for 2d and 3d

* 2d interp and grad

* 3d interp and grad

* - weight functions for 1d,2d,3d
- link the indices to the kernel
- link the fields to the kernel
- link the basis to the kernel

* Add the qFunction reader + inlining

* Add qf files for the tests.

* Add qf file for ceed/ex1

* Add qf file for mfem/bp1

* All tests pass.

* Add qFunction for mfem/bp3, petsc/bp1, and petsc/bp3.

* mfem/bp1 passes + remove dead code

* Fix a bug in n_quads_out for writeQuads

* mfem/bp3 passes.

* All tests all examples pass.

* Temporary tweaks for mfem benchmarking

* Add Context management.

* Modify .qf files to take into account the context.

* Enable optimizations.

* First set of optimization for 2D and 3D.

* double pointer format for the qFunction.

* Change the .qf files to have the same code as the C functions.

* Make previous Cuda backends use .qf files.

* Add a return value to qFunctions.

* Make cpu backends use .qf files.

* Minor: clean commented code.

* Add guarded math.h for petsc examples.

* Remove previous nek qf files.

* Remove .cu files.

* Remove .qf files.

* Remove dead code in the tests.

* make style

* Make style fix.

* more make style fixes.

* CEED_QFUNCTION - improve macro for CPU filenames

* Add CEED_QFUNCTION macro to navierstokes.c

* Fix PETSc gitignore

* Change default NS problemtype to density_current (#307) in navierstokes.c

* Fix petsc bp1.h

* Real Fix for petsc bp1.h...

* fix

* README - Add /gpu/cuda/gen

* PETSc - Update dmplex example to use *_loc

* cuda/reg - fix typo

* Revert a couple of small changes

* Fix a bug in mfem bp3 similar to the previous bug in petsc bp3.

* Make PETSc qfunctions look closer to master, and minor style for debugging.

* More uniformity changes

* Fix a strange CUDA_OUT_OF_RESSOURCE bug.

* NS - fix fname variables

* Use a different convention for qFunction ncomp.

* update cuda-gen backend and bpsdmplex.

* PETSc - style update

* update mfem bp1 and bp3.

* Interface - Use size instead of ncomp for QFunction fields

* update ceed example and tests.

* Tests - Update ncomp to size

* CPU Backends - Update ncomp to size

* CPU Backends - style

* Nek - Update ncomp to size

* Opt - fix style

* CUDA - update ncomp to size

* Doc - Update API documentation for QFunction \ncomp->size

* OCCA - Patch QFunction ncomp -> size, work but revamp will be better

* OCCA - assert dim>0 for clang-tidy

* CUDA - Change GetNumComp to GetSize

* Basis - Shift check for dim > 0 to interface

* Doc update

* Update NS field size

* NS - Fix problem options

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Merge pull request #316 from CEED/jeremy/codecov

Update Codecov