History log of /petsc/doc/changes/ (Results 451 – 475 of 568)
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53e0a2f313-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add PetscLogState and PetscLogHandler to global logging

Without removing the existing global objects (such as petsc_stageLog),
This commit creates a global PetscLogState (petsc_log_state)

Profiling: Add PetscLogState and PetscLogHandler to global logging

Without removing the existing global objects (such as petsc_stageLog),
This commit creates a global PetscLogState (petsc_log_state) and
connects it to PetscLogInitialize() and PetscLogFinalize().

The functions PetscLogHandlerStart() and PetscLogHandlerStop() are added
to connect a general PetscLogHandler() to the global petsc_log_state,

A small array of slots for log handlers, PetscLogHandlers, is
added. It will be used in the macros like `PetscLogEventBegin()`
and `PetscLogEventEnd()`, so we make a wrapper type
`PetscLogHandlerHot` that exposes just as much of the internals
as are necessary to implement the macros.

Because they do not conflict with existing functions,
the following functions that depend on the new infrastructure
are added:

- PetscLogStageGetName(), PetscLogEventGetName(), PetscLogClassGetId(),
and PetscLogClassIdGetName() for completeness and to bring
of the functionality from petsc4pys' custom header into the
library proper.

- PetscLogEventsPause() and PetscLogEventsResume(), which
will replace PetscLogPauseCurrentEvent_Internal() and
PetscLogEventResume_Internal()

- PetscLogPerfstubsBegin() and PetscLogLegacyCallbacksBegin()

show more ...

0970d93f13-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add legacy callbacks implementation of PetscLogHandler

The existing logging infrastructures has four exposed callback pointers:

- PetscLogPLB / PetscLogPLE for PetscLogEventBegin() / Pet

Profiling: Add legacy callbacks implementation of PetscLogHandler

The existing logging infrastructures has four exposed callback pointers:

- PetscLogPLB / PetscLogPLE for PetscLogEventBegin() / PetscLogEventEnd()
These can also be set with PetscLogSet

- PetscLogPHC / PetscLogPHD for PetscLogObjectCreate() /
PetscLogObjectDestroy()

This log handler implementation provides a path for users who have been
setting their own callbacks with these functions to upgrade to the new
PetscLogHandler interface.

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ccf0b5c113-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add tau perfstubs implementation of PetscLogHandler

In the existing logging, perfstubs runs automatically with -log_view
if PETSc is configured --with-tau-perfstubs. This new PetscLogHan

Profiling: Add tau perfstubs implementation of PetscLogHandler

In the existing logging, perfstubs runs automatically with -log_view
if PETSc is configured --with-tau-perfstubs. This new PetscLogHandler
implementation will be used with a new -log_perfstubs command line
option that will only run this handler and not the default handler.

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856bee6913-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: add MPE implementation of PetscLogHandler

This is meant to handle -log_mpe.

6467efc913-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add trace implementation of PetscLogHandler

This is a minimal PetscLogHandler implementation for -log_trace.

b932118813-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add nested PetscLogHandler implementation

This log handler has behavior like the behavior of
PetscLogNestedBegin().

Unlike the implementation of PetscLogHandler_Default, I did not try to

Profiling: Add nested PetscLogHandler implementation

This log handler has behavior like the behavior of
PetscLogNestedBegin().

Unlike the implementation of PetscLogHandler_Default, I did not try to
do a faithful translation of the existing nested logging behavior, for
two reasons.

- The existing implementation keeps sorted lists of nested paths ("Event
A;Event B;"), and for each of those paths keeps a sorted list of the
top-level events ("Event C", "Event D") that map that path to other
paths (path + event => other path). It's a complicated data structure,
and the benefit of the sorting (O(log n) lookup) is probably not worth
the more expensive insertion cost each time a new path + event combo
appears. Instead I implemented the path + event => other path
lookup as a hash map, which simplified the implementation
significantly.

- The existing implementation assigns an event to each path, modifying
the event registry in place. This messes things up if you want
to both -log_view and -log_view ::ascii_flamegraph output, the
original motivation for refactoring the profiling infrastructure.
In the new implementation, the nested handler has its own
PetscLogState that it modifies, and an inner copy of
PetscLogHandler_Default the acts on that nested state.

- The PetscLogGlobalNames data structure also simplifies the
construction of a linearized tree of events in the final
viewing stage, although the low-level xml construction
routines are copied almost verbatim from the previous
implementation.

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78f1b9b413-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Implement the default PetscLogHandler

The existing default log handling that uses the PetscStageLog
is translated in the PetscLogHandler_Default implementation
of PetscLogHandler.

- Most

Profiling: Implement the default PetscLogHandler

The existing default log handling that uses the PetscStageLog
is translated in the PetscLogHandler_Default implementation
of PetscLogHandler.

- Most data that is global in the existing log handling
is moved into the struct, with the exception of the
raw counters.

- The registry data structures of PetscStageLog (eventLog,
classLog) are not reproduced because they are now in
the PetscLogState interface.

- PETSC_LOG_RESIZABLE_ARRAY is used to implement
resizable arrays instead of PetscStageInfo,
PetscEventPerfLog, and PetscClassPerfLog

- The tau perfstubs and MPE functionality is not
reproduced because they will become new
handlers on their own.

- The PetscLogGlobalNames provided by the
PetscLogRegistry interface make the logging
robust to differences in which events / stages are
registered on which process and in which order.

Otherwise the functions are relatively faithful translations
of the existing PetscStageLog functions into the new interface.
When reviewing this commit it might help to have a diff
between the PetscStageLog and PetscLogHandler_Default functions
to see what changes between them. I am working on a way to attach
that to the MR associated with this change.

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19ef957c13-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add PetscLogHandler interface

PetscStageLog tries to handle multiple ways of interpreting profiling
data:

* -log_view (default),
* -log_view ::ascii_xml and -log_view ::ascii_flamegraph

Profiling: Add PetscLogHandler interface

PetscStageLog tries to handle multiple ways of interpreting profiling
data:

* -log_view (default),
* -log_view ::ascii_xml and -log_view ::ascii_flamegraph (nested),
* -log_trace,
* -log_mpe,
* tau perfstubs (implicitly),
* nvidia

They can interact with petsc_logState in incompatible ways.

PetscLogHandler gives each handler its own interface so that
it can have its own data structures. They key operations
that a log handler can implement are:

- PetscLogHandlerEventBegin() / PetscLogHandlerEventEnd()
- PetscLogHandlerEventSync()
- PetscLogHandlerStagePush() / PetscLogHandlerStagePop()
- PetscLogHandlerObjectCreate() / PetscLogHandlerObjectDestroy()

The remaining operations are PetscObject standard functions,
with the except of `PetscLogHandlerSetState()` / `PetscLogHandlerGetState()`,
which control the `PetscLogState` that the handler can use to
get information about registered things and about the stage stack.

This change only introduces the type, it does not deploy it
to replace anything in the current profiling interface.
When it does, the user-defined log handling that was implemented
by setting callbacks in in PetscLogSet() will be replaced with
user-defined PetscLogHandler instances.

show more ...

6873511f13-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Add PetscLogState interface to describe events and stages

The design that is being implemented is a separation between the
logging state that is common to multiple log handlers and the lo

Profiling: Add PetscLogState interface to describe events and stages

The design that is being implemented is a separation between the
logging state that is common to multiple log handlers and the log
handlers themselves. This new interface PetscLogState will
become the replacement for PetscStageLog, but this change
only introduces it without deploying it.

Internally, PetscLogState is:

- A registry (PetscLogRegistry) of more-or-less immutable information
about stages, events, and classes that have been registered. The
registry is not exposed, but the registry entries (PetscLogEventInfo,
PetscLogStageInfo, PetscLogClassInfo), that I feel comfortable exposing
them (pass-by-copy) through PetscLogStateXXXGetInfo() functions.

- A stack of stages that have been pushed and popped

- A PetscBT describing the active/inactive state of logging stages
and events. I have kept the existing semantics of
PetscLogStateSetActive / PetscLogEventActivate /
PetscLogEventActivateClass, which is: if the stage is active
and the (event,stage) pair is active, then log handling proceeds.
This logic is encoded in PetscLogStateStageEventIsActive

- For symmetry I have added PetscLogClass that matches PetscLogStage
and PetscLogEvent

- The profiling interface is littered with ad hoc resizable array types
(PetscEventRegLog, PetscEventPerfLog, PetscClassPerfLog,
PetscStageLog). The intention is for these to go away. This commit
introduces a PetscHashMap-style macro constructor for resizable
arrays (PETSC_LOG_RESIZABLE_ARRAY). It is only used in implementing
these arrays: they do not appear in the public interface. Storage
could be switched to a hashmap or other backing storage at some point
in the future.

show more ...

1c1ad86e13-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: make visibility of logging types align with manpages

- Create file petsclogtypes.h for exposed logging data types. Move types
that will remain through upcoming changes (PetscLogEvent,

Profiling: make visibility of logging types align with manpages

- Create file petsclogtypes.h for exposed logging data types. Move types
that will remain through upcoming changes (PetscLogEvent,
PetscLogStage, PetscIntStack, PetscLogEventPerfInfo).

- Add docstring for PetscLogEventPerfInfo: it is the one important
type carrying profiling information that will remain through upcoming
changes.

- Change the submansec of petsclog.h from Sys to Profiling, better
reflecting the contents of the file.

- As the PetscIntStack methods have had manual pages (and externally
visible symbols) for years, move their declarations from
petsc/private/logimpl.h to petsclog.h. PetscIntStack is a low-level
data-structure similar to PetscBT, and this change puts PetscIntStack on
roughly equal footing with PetscBT.

show more ...

00bc44a426-Jul-2023 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2023-06-16/pcmpi-simplify-options-database-api' into 'main'

Change the options database API for PCMPI to eliminate the -mpi_ options...

See merge request petsc/petsc!6611


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/utilities/missing.py
/petsc/config/gmakegen.py
/petsc/config/gmakegentest.py
dev.rst
/petsc/doc/manual/getting_started.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/manual/tests.rst
/petsc/gmakefile.test
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/pcimpl.h
/petsc/include/petscksp.h
/petsc/include/petscmacros.h
/petsc/include/petscpc.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/docs/_doc_section.py
/petsc/lib/petsc/conf/rules.utils
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/tests/benchmarkscatters/ex1.c
/petsc/src/ksp/ksp/tutorials/ex1.c
/petsc/src/ksp/ksp/tutorials/ex43.c
/petsc/src/ksp/ksp/tutorials/output/ex1_1.out
/petsc/src/ksp/ksp/tutorials/output/ex1_1_aijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex1_2.out
/petsc/src/ksp/ksp/tutorials/output/ex1_2_aijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex1_3.out
/petsc/src/ksp/ksp/tutorials/output/ex1_3_aijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex1_minit.out
/petsc/src/ksp/ksp/tutorials/output/ex1_mpi_linear_solver_server_1.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mg/gdsw.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/mpi/pcmpi.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/wb/wb.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex254.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/ksponly/ksponly.c
/petsc/src/snes/impls/ls/ls.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/ntrdc/ntrdc.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/shell/snesshell.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/ss/viss.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/shell/linesearchshell.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/tutorials/ex10d/ex10.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/draw/utils/cmap.c
/petsc/src/sys/classes/viewer/impls/socket/mex-scripts/bread.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/impls/bdf/bdf.c
/petsc/src/vec/is/is/tests/ex13.c
/petsc/src/vec/vec/tests/ex1k.kokkos.cxx
/petsc/src/vec/vec/tests/ex2k.c
/petsc/src/vec/vec/tests/ex61.c
7a99bfca22-Jun-2023 Barry Smith <bsmith@mcs.anl.gov>

Change the options database API for PCMPI to eliminate the -mpi_ options prefix; thus one can run -mpi_linear_solver_server -ksp_type cg -pc_type gamg to get the parallel version of these preconditio

Change the options database API for PCMPI to eliminate the -mpi_ options prefix; thus one can run -mpi_linear_solver_server -ksp_type cg -pc_type gamg to get the parallel version of these preconditioners.

Commit-type: usability

show more ...

3821be0a17-Jun-2023 Barry Smith <bsmith@mcs.anl.gov>

Track levels of nesting of KSP, for example KSPBJACOBI has nesting 1 higher than the calling KSP


/petsc/.gitlab-ci.yml
dev.rst
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/pcimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/docs/_doc_section.py
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarm_migrate.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/interface/dmperiodicity.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/utils/lmvm/lmvmutils.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mg/gdsw.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/mpi/pcmpi.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/wb/wb.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/impls/misk/misk.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/kaij/kaij.c
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/petsc/src/snes/interface/snes.c
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/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
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/petsc/src/sys/logging/utils/stagelog.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/olist.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/ptype.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.out
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.patch
/petsc/src/sys/tests/linter/testValidFunctionDocStrings.c
/petsc/src/sys/utils/memc.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/ts/impls/explicit/ssp/ssp.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/impls/implicit/irk/irk.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/ts/interface/tsrhssplit.c
/petsc/src/ts/utils/dmdats.c
/petsc/src/ts/utils/dmlocalts.c
/petsc/src/ts/utils/dmnetworkts.c
/petsc/src/ts/utils/dmplexts.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/tagger/impls/and.c
/petsc/src/vec/vec/utils/tagger/impls/or.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vec/utils/vinv.c
5039956b24-Jul-2023 Hong Zhang <hzhang@mcs.anl.gov>

Add specific vertex viewing for DMNetwork -- zoom in on selected vertices


/petsc/.gitlab-ci.yml
dev.rst
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/docs/_doc_section.py
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/petsc/src/snes/interface/snes.c
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/petsc/src/sys/classes/viewer/impls/binary/binv.c
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/petsc/src/sys/objects/ptype.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.out
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.patch
/petsc/src/sys/tests/linter/testValidFunctionDocStrings.c
/petsc/src/sys/utils/memc.c
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/petsc/src/ts/impls/implicit/alpha/alpha2.c
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/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/ts/interface/tsrhssplit.c
/petsc/src/ts/utils/dmdats.c
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/petsc/src/ts/utils/dmplexts.c
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/petsc/src/vec/is/ao/interface/ao.c
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/petsc/src/vec/vec/utils/tagger/impls/and.c
/petsc/src/vec/vec/utils/tagger/impls/or.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vec/utils/vinv.c
93ec0da916-Jul-2023 Pierre Jolivet <pierre@joliv.et>

Rename VecChop() into VecFilter()

2ce66baa12-Jul-2023 Pierre Jolivet <pierre@joliv.et>

Rename MatChop() into MatFilter()

44f6e56e16-Jul-2023 Pierre Jolivet <pierre@joliv.et>

Change log fixes


/petsc/config/BuildSystem/config/packages/mmg.py
/petsc/config/BuildSystem/config/packages/parmmg.py
dev.rst
/petsc/src/binding/petsc4py/conf/confpetsc.py
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/petsc/src/binding/petsc4py/src/petsc4py/PETSc/SF.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/SNES.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Scatter.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Section.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Space.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/TAO.pyx
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/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Viewer.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/cyclicgc.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/dlpack.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/libpetsc4py.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdm.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdmshell.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscis.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscksp.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscobj.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscpc.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscsnes.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petsctao.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscts.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscvec.pxi
/petsc/src/sys/utils/mpishm.c
25fed66722-Jul-2023 Toby Isaac <toby.isaac@gmail.com>

Add PetscAssertPointer to change log


/petsc/.clang-format
/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/ADIOS.py
/petsc/config/BuildSystem/config/packages/ADOLC.py
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/petsc/src/dm/dt/space/impls/ptrimmed/spaceptrimmed.c
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/petsc/src/dm/impls/da/kokkos/dagetov.kokkos.cxx
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.h
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/cgns/plexcgns2.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexceed.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexegads.c
/petsc/src/dm/impls/plex/plexegadslite.c
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/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpoint.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsfc.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/transform/impls/extrude/plextrextrude.c
/petsc/src/dm/impls/plex/transform/interface/plextransform.c
/petsc/src/dm/impls/product/product.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/swarm/swarm_migrate.c
/petsc/src/dm/impls/swarm/swarmpic.c
/petsc/src/dm/impls/swarm/tests/ex6.c
/petsc/src/dm/impls/swarm/tests/ex9.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmceed.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/dm/interface/dmgenerate.c
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/petsc/src/dm/interface/dmperiodicity.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/dm/partitioner/impls/matpart/partmatpart.c
/petsc/src/dm/partitioner/impls/shell/partshell.c
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/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/ksp/impls/python/pythonksp.c
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/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
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/petsc/src/vec/vec/impls/mpi/cupm/cuda/vecmpicupm.cu
/petsc/src/vec/vec/impls/mpi/cupm/hip/vecmpicupm.hip.cpp
/petsc/src/vec/vec/impls/mpi/cupm/vecmpicupm.hpp
/petsc/src/vec/vec/impls/mpi/kokkos/mpikok.kokkos.cxx
/petsc/src/vec/vec/impls/nest/vecnest.c
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm.hpp
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/veccreate.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/tagger/impls/andor.c
/petsc/src/vec/vec/utils/tagger/impls/cdf.c
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6dde82a121-Jul-2023 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/2023-07-18/feature-vecmaxpby' into 'main'

Add VecMAXPBY()

See merge request petsc/petsc!6733

17ea310b13-Jul-2023 Pierre Jolivet <pierre@joliv.et>

MatEliminateZeros(): add [S]BAIJ implementations

58c11ad412-Jul-2023 Pierre Jolivet <pierre@joliv.et>

MatEliminateZeros(): skip zero nondiagonal coefficients

20c04d7914-Jul-2023 Pierre Jolivet <pierre@joliv.et>

Expose MatComputeVariableBlockEnvelope() in public headers

6bd3a4fd08-Jul-2023 Stefano Zampini <stefano.zampini@gmail.com>

TS: add infrastructure to support time-dependent problems with varying size


/petsc/.gitlab-ci.yml
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/petsc/src/vec/vec/impls/mpi/cupm/cuda/vecmpicupm.cu
/petsc/src/vec/vec/impls/mpi/cupm/hip/vecmpicupm.hip.cpp
/petsc/src/vec/vec/impls/seq/cupm/cuda/vecseqcupm.cu
/petsc/src/vec/vec/impls/seq/cupm/hip/vecseqcupm.hip.cpp
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
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/petsc/src/vec/vec/utils/vinv.c
da0e059d18-Jul-2023 Junchao Zhang <jczhang@mcs.anl.gov>

Vec: add VecMAXPBY()


/petsc/.gitlab-ci.yml
dev.rst
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/petsc/src/vec/vec/impls/hypre/vhyp.c
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/petsc/src/vec/vec/utils/vinv.c
6973369017-Jul-2023 Pierre Jolivet <pierre@joliv.et>

Docs: no such a thing as MatSetOptions()


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/petsc/src/vec/vec/utils/tagger/interface/dlregistagger.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vec/utils/tagger/interface/taggerregi.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vec/utils/vsection.c

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