Merge branch 'barry/2025-06-10/add-fortran-stubs-from-static-functions-in-includes' into 'main'

Automatically generate Fortran C stubs for static inline functions in include directory

See merge req

Merge branch 'barry/2025-06-10/add-fortran-stubs-from-static-functions-in-includes' into 'main'

Automatically generate Fortran C stubs for static inline functions in include directory

See merge request petsc/petsc!8469

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add missing MANSEC from include files

Merge branch 'rmills/feature-ml-petscregressor' into 'main'

Add basic PetscRegressor component with support for a few linear regressors

See merge request petsc/petsc!7709

Add initial version PetscRegressor, part of the planned machine learning (ML) toolkit

Co-authored-by: Mr. Hong Zhang <hongzhang@anl.gov>
Co-authored-by: Hansol Suh <hsuh@anl.gov>
Co-authored-by: Bar

Add initial version PetscRegressor, part of the planned machine learning (ML) toolkit

Co-authored-by: Mr. Hong Zhang <hongzhang@anl.gov>
Co-authored-by: Hansol Suh <hsuh@anl.gov>
Co-authored-by: Barry Smith <bsmith@petsc.dev>
Co-authored-by: Toby Isaac <toby.isaac@gmail.com>
Co-authored-by: Satish Balay <balay@mcs.anl.gov>

Mr. Hong Zhang developed the petsc4py interface and examples.
Hansol Suh provided extensive help with updating the code to the latest PETSc coding guidelines and APIs, some documentation development, getting documentation to build correctly, getting new tests into the test harness, and numerous big fixes plus minor changes.
Barry Smith provided extensive feedback and code to get the Fortran interfaces and documentation build working.
Toby Isaac provided a fix to prevent breakage with complex-arithmetic builds.
Satish Balay provided important help with fixing builds.

Thanks-to: Pierre Jolivet <pierre@joliv.et>
Thanks-to: Jed Brown <jed@jedbrown.org>
Thanks-to: Jose Roman <jroman@dsic.upv.es>
Thanks-to: Stefano Zampini <stefano.zampini@gmail.com>

Pierre, Jed, Jose, and Stefano provided extremely helpful feedback and suggestions during the merge review process.

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Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'jacobf/2023-08-17/header-guard-check' into 'main'

Check header guards

See merge request petsc/petsc!6822

Convert all header guards to pragma once

Merge branch 'uzerbinati/petsc4py' into 'main'

Exposing minimal DMPlexTransform for Alfeld refinement

See merge request petsc/petsc!6164

Exposing minimal DMPlexTransform for Alfeld refinement

Merge branch 'jacobf/2022-11-08/remove-petsctable' into 'main'

Remove PetscTable

See merge request petsc/petsc!5819

- Replace PetscTable with PetscHMapI.
- Rename:
- PetscTableCreate() -> PetscHMapICreateWithSize()
- PetscTableFind() -> PetscHMapIGetWithDefault()
- PetscTableAdd() -> PetscHMapISetWithMode()

Merge branch 'jacobf/2022-08-29/petscdevicecontext-backend-update' into 'main'

Update PetscDevice and PetscDeviceContext backends

See merge request petsc/petsc!5566

Rework PetscDeviceContext backends and supporting code:
- Add PETSC_DEVICE_HOST
- Add PetscDeviceAllocate()
- Add PetscDeviceMalloc()
- Add PetscDeviceDeallocate()
- Add PetscDeviceFree()
- Add Petsc

Rework PetscDeviceContext backends and supporting code:
- Add PETSC_DEVICE_HOST
- Add PetscDeviceAllocate()
- Add PetscDeviceMalloc()
- Add PetscDeviceDeallocate()
- Add PetscDeviceFree()
- Add PetscDeviceMemcopy()
- Add PetscDeviceArraycopy()

- Split petscdevice.h into petscdevice_cuda.h and petscdevice_hip.h
- Add petscdevice_cupm.h
- Extend cupm::Interface and cupm::BlasInterface classes
- Add more C++ utility wrappers

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Merge branch 'barry/2021-05-16/fix-double-lines' into 'main'

Fix typos in source

See merge request petsc/petsc!3984

Remove all double blank lines from source

Commit-type: petsc-style
/2h

Merge branch 'knepley/fix-section-headers' into 'master'

Knepley/fix section headers

See merge request petsc/petsc!2072

Section: Put header in the "right place"

and fix compile warnings

Merge branch 'master' into jpusztay/feature-swarm-symplectic-example

Merge branch 'master' into jpustay/feature-swarm-example

Merged petsc/petsc into master

Merge branch 'master' into arcowie-rem/feature-error-logging

* master: (393 commits)
Bib: Update reference
Mat: Doc fix
Bib: Updated ref
PetscDS: Doc fixes
PC+LU: Do not try to refactor an

Merge branch 'master' into arcowie-rem/feature-error-logging

* master: (393 commits)
Bib: Update reference
Mat: Doc fix
Bib: Updated ref
PetscDS: Doc fixes
PC+LU: Do not try to refactor an already factored matrix
Mat: Small fix for checking and docs
Mat: Added MatSetFactorType() - Needed it when making a shell matrix look factored
PetscDS: Added PetscDSUpdateBoundary() - Lets the user change the boundary condition
single precision produces different convergence history
p4est: has a dependency on zlib - so handle it correctly
Add -mat_mffd_complex to use the Lyness complex number trick to compute J_u * v instead of differencing.
Replace VecWAXPY by VecAXPY if needed
Revert "Replace VecWAXPY by VecAXPY if needed"
Replace VecWAXPY by VecAXPY if needed
MatHermitianTransposeGetMat and MatCreateVecs
ex19: Updated test filter to avoid false positives.
DM: Improved Global-To-Natural docs Suggested-by: Josh L <ysjosh.lo@gmail.com>
Do not build shared openblas when doing static build
Upgrade OpenBLAS to 0.3.3
test: add alt output file for changes in OSX-10.14 and Xcode-10.0 [perhaps related to ML]
...

Conflicts:
src/vec/is/utils/vsectionis.c

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Merged petsc/petsc into master

Merge branch 'psanan/dmstag' [PR #1146]

* psanan/dmstag:
DMStag basic implementation
Basic implementations of DMStag and DMProduct, with some accompanying documentation and tests.

DM: Add DMStag

Features include:
- 1d, 2d, 3d grids
- ghosted, periodic and "none" boundary conditions
- box and star communication patterns
- stencil-based setting of Vec and Mat entries
- direct a

DM: Add DMStag

Features include:
- 1d, 2d, 3d grids
- ghosted, periodic and "none" boundary conditions
- box and star communication patterns
- stencil-based setting of Vec and Mat entries
- direct array-based access to local vectors
- product coordinates
- helper functions for product coordinate arrays
- helper to split DMStag+Vec to a DMDA+Vec
- 4 tutorial examples
- 152+ test cases for the test suite (make -f gmakefile test globsearch="*stag*" to run them)

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