| #
b19d005e
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran ch
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutation argument to DMPlexCreateSection() - Need it because it calls PetscSectionSetUp()
PetscSection: Added an optional permutation for the chart - Removed the unnecessary atlasLayout - This permutation will allow people to segregate ghost unknowns at the end of their numbering, and also to get around the stratification of point numbering in Plex
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| #
f8f126e8
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| 27-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added permutation argument to DMPlexCreateSection()
- Need it because it calls PetscSectionSetUp()
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| #
ec5e6261
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| 25-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-ts'
* knepley/feature-plex-ts:
DMPlex+PetscFE: Adding support for TS - Added DMPlexCompiteIFunctionFEM() - Added PetscFEIntegrateIFunction() and Bd version - Add
Merge branch 'knepley/feature-plex-ts'
* knepley/feature-plex-ts:
DMPlex+PetscFE: Adding support for TS - Added DMPlexCompiteIFunctionFEM() - Added PetscFEIntegrateIFunction() and Bd version - Added IFunction to FEM struct
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| #
55f2e967
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| 24-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added DMPlexInsertBoundaryValues()
- Uses DMPlexGetBoundary() and DMPlexProjectFunction() to set boundary values
- Used in the viewers
- Some viewer cleanup
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| #
b2533dd1
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| 22-Mar-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Fixing merge conflicts in dmregall.
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| #
0c9e52d3
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| 22-Mar-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
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| #
af1eca97
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| 21-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex+PetscFE: Adding support for TS
- Added DMPlexCompiteIFunctionFEM()
- Added PetscFEIntegrateIFunction() and Bd version
- Added IFunction to FEM struct
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| #
bb161d1f
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| 21-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'mlange/feature-plex-mesh-from-file'
* mlange/feature-plex-mesh-from-file:
DMPlex: Switching more tests to the new ExodusII wrappers
DMPlex: Switching tests to use the new ExodusII/
Merge branch 'mlange/feature-plex-mesh-from-file'
* mlange/feature-plex-mesh-from-file:
DMPlex: Switching more tests to the new ExodusII wrappers
DMPlex: Switching tests to use the new ExodusII/CGNS file wrappers
DMPlex: Add DMPlexCreateCGNSFromFile() wrapper
DMPlex: Add DMPlexCreateExodusFromFile() wrapper
Conflicts:
config/BuildSystem/config/packages/__init__.py
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| #
204681ed
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| 19-Mar-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
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| #
9c925a2c
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| 18-Mar-2014 |
Shri <abhyshr@mcs.anl.gov> |
Merge branch 'master' into shri/ts-events
Conflicts:
src/ts/interface/ts.c
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| #
5f6acfaf
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| 18-Mar-2014 |
Shri <abhyshr@mcs.anl.gov> |
Merge branch 'master' into shri/feature-dm-circuit
Conflicts:
src/dm/impls/makefile
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| #
44cd5272
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| 26-Feb-2014 |
Michael Lange <michael.lange@imperial.ac.uk> |
DMPlex: Add DMPlexCreateCGNSFromFile() wrapper
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| #
33751fbd
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| 26-Feb-2014 |
Michael Lange <michael.lange@imperial.ac.uk> |
DMPlex: Add DMPlexCreateExodusFromFile() wrapper
This wrapper function builds a Plex directly from a given file name,
so that user applications do not need to execute ex_open().
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| #
1d763ceb
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| 17-Mar-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/matcoloring-greedy
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| #
70034214
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| 17-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Reorganized the handling of point adjacency
- Replaced centerDim with useCone, useClosure, Added DMPlexGet/SetAdjacencyUseCone/Closure()
- Now partitioning and preallocation use the same adja
DMPlex: Reorganized the handling of point adjacency
- Replaced centerDim with useCone, useClosure, Added DMPlexGet/SetAdjacencyUseCone/Closure()
- Now partitioning and preallocation use the same adjacency routines
- Added DMPlexGetAdjacency() and the internal version which does not allocate
- Moved distribution and partitioning code into separate files
-
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| #
899e4425
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| 10-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-fas'
* knepley/feature-plex-fas: (56 commits)
DMPlex: Removed unused variable
DMPlex: Fix for C++ build, small fix for PetscFE
DMPlex: Removed leak from Tria
Merge branch 'knepley/feature-plex-fas'
* knepley/feature-plex-fas: (56 commits)
DMPlex: Removed unused variable
DMPlex: Fix for C++ build, small fix for PetscFE
DMPlex: Removed leak from Triangle
SNES ex12: Two working unstructured FAS solves for the unregularized p-Laplacian
DMPlex: Cleaned up some memory issues
DMPlex: Implement injection - I don't think this should be required
DMPlex: DM interpolation requires the scaling vector for FAS
DMPlex: Can now create a map from coarse to fine vertices - This is currently necessary for FAS, which I think is wrong
DMPlex: Turn off Fortran stub
DMPlex: Fix DMPlexMatSetClosureRefined() - Reject duplicate fine points - Screen out point with dof = 0 - Fix the allocation for fine points
DMPlex: My brain did not work for several days - I have fixed the interpolation code - I think I can reuse that other code for something else
DMPlex: Fix setting Plex options on automatically refined meshed
SNES ex12/31/52/62/72: Use new SNESComputeJacobian() interface
DMPlex: Remove MatStructure from DMPlexComputeJacobianFEM() - Add missing declarations
Sys Logging: Fixes for log detail - Must preserve reduction count - Output objects and memory - Output stage summary
SNES ex12: Fixing things for multilevel - Need to set PetscFE on all coarse grids - Need application context for interpolator construction
SNES ex12: Use PetscFESetUp(), and fix quadrature ref handling
SNES ex52/62: Use PetscFESetUp(), and fix quadrature ref handling
DMPlex ex3: Uses automatic section creation, PetscFESetUp(), and fix quadrature ref handling
DMPlex: Fixing interpolator construction - Fixed definition of rectangular sizes - Use PetscFERefine() - Use special MatSet
...
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| #
2389894b
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| 05-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Can now create a map from coarse to fine vertices
- This is currently necessary for FAS, which I think is wrong
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| #
0405ed22
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| 03-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Remove MatStructure from DMPlexComputeJacobianFEM()
- Add missing declarations
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| #
061e9cde
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| 27-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merging master with feature-dmmoab. Only conflict was with SOURCECXX specification under impls/moab/makefile.
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| #
bf5b0b0b
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| 25-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
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| #
020631bc
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| 19-Feb-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
Conflicts:
include/petscsnesfas.h
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| #
6c73c22c
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| 18-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added DMBoundary struct
- This will replace the stuff in TS ex11
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| #
46b85170
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| 18-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMLabel: Added DMLabelHasValue()
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| #
bceba477
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| 17-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Adding support for interpolation between regularly refined meshes
- Added DMPlexComputeInterpolatorFEM()
- Added PetscFERefine()
- Added PetscFEIntegrateInterpolator_Basic()
- Not working now
DMPlex: Adding support for interpolation between regularly refined meshes
- Added DMPlexComputeInterpolatorFEM()
- Added PetscFERefine()
- Added PetscFEIntegrateInterpolator_Basic()
- Not working now since coarse meshes do not have Sections attached
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| #
1f1b5a69
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| 15-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/ts-rhsjacobian-only
|