Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetC

Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetCtx ctx)

See merge request petsc/petsc!8956

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Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now t

Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now the standard for passing in contexts
- PetscCtxRt ctx is the standard for passing out contexts, including context destroy routines based on PetscCtxDestroyFn

Both of these are typedef to void*

Also removed most use of user and userctx for context arguments now consistently named ctx

Improved documentation on PetscCtx and PetscCtxRt and on how to use contexts (including getting them) from Fortran

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Merge branch 'jolivet/clang-format-21' into 'main'

clang-format-21

See merge request petsc/petsc!8202

Remove unnecessary braces around one-liners

git grep -lE "[ ]*(if|for|while) \(.*\) {[^;]*;[^;]*}$" -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | xargs sed -i '' -E 's#([ ]*)(if|for|while) \((.*)\

Remove unnecessary braces around one-liners

git grep -lE "[ ]*(if|for|while) \(.*\) {[^;]*;[^;]*}$" -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | xargs sed -i '' -E 's#([ ]*)(if|for|while) \((.*)\) {([^;]*);([^;]*)}$#\1\2 \(\3\)\4;\5#'

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One-liners from petsc/petsc!5344 and petsc/petsc!5557

Slightly reworked regular expression

git ls-files -z -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | while IFS= read -r -d '' file; do
cat

One-liners from petsc/petsc!5344 and petsc/petsc!5557

Slightly reworked regular expression

git ls-files -z -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | while IFS= read -r -d '' file; do
cat $file | tr '\n' '\r' | sed -E 's/\r([ ]*)(for|if|while|else) ([^\r]*)\{\r[ ]*Petsc([a-zA-Z]*)\(([^\r]*)\);\r[ ]*\}\r/\r\1\2 \3Petsc\4(\5);\r/g' | tr '\r' '\n' > ${file}.joe; mv ${file}.joe ${file}
done

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Merge branch 'MarDiehl/fix-typo' into 'main'

missing "s" for isascii and issundials

See merge request petsc/petsc!8559

missing "s" for isascii and issundials

Merge remote-tracking branch 'origin/release'

Merge branch 'jolivet/fix-typos' into 'release'

Fix typos

See merge request petsc/petsc!8259

Fix typos

Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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some doc/manual page fixes

Merge branch 'barry/2024-05-29/minor-fortran-stub-cleanup' into 'main'

More improvements to Fortran stubs and interfaces

See merge request petsc/petsc!7598

All constructors should do PetscAssertPointer on output object

Reported-by: Blaise Bourdin

Constructors should not initialize the output to NULL upon entry, serves no purpose

Fix some formatting i

All constructors should do PetscAssertPointer on output object

Reported-by: Blaise Bourdin

Constructors should not initialize the output to NULL upon entry, serves no purpose

Fix some formatting in constructors

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Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2024-06-08/minor-docs-fixes/release' into 'release'

Minor docs fixes

See merge request petsc/petsc!7618

Minor docs fixes

Merge branch 'barry/2024-04-26/fix-sowing-viewers' into 'main'

Remove manual Fortran stubs for PetscViewer and PetscObject arguments since now handled by sowing

See merge request petsc/petsc!7511

Update to sowing version that supports PetscViewer and PetscObject

Remove manual Fortran stubs for PetscViewer and PetscObject arguments since now handled by sowing

Also handles the passing of null

Update to sowing version that supports PetscViewer and PetscObject

Remove manual Fortran stubs for PetscViewer and PetscObject arguments since now handled by sowing

Also handles the passing of null objects correctly

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Merge branch 'barry/2024-04-13/fix-sowing-strings' into 'main'

Update PETSc to use sowing bfort that handles string arguments and PETSC_NULL_INT

See merge request petsc/petsc!7480

Update source code removing all unneeded /*@C and associated manual stubs and interfaces

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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Merge branch 'barry/2024-01-30/use-petscusetypemethod' into 'main'

Fix places where PetscUseTypeMethod() and related macros should be used.

See merge request petsc/petsc!7254