Merge branch 'knepley/feature-embedded-manifold' into 'main'

Plex+PetscFE: Fixes to allow embedded manifolds

See merge request petsc/petsc!8141

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the Pe

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the PetscFEGeomMode
- J and invJ have dE dimensions
- f1, g1, g2, g3 have dE dimensions
- FIX the dim argument of all point function is really dE because it is used to index the gradients
- Clarified behavior of PetscFEGeomGetCellPoint()
- Now -dm_plex_coordinate_dim can change the coordinate dimension of a mesh created by Plex
- Implicit cell geometry must be used when dim != cdim

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Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2024-06-08/minor-docs-fixes/release' into 'release'

Minor docs fixes

See merge request petsc/petsc!7618

Minor docs fixes

Merge branch 'knepley/fix-dt-fortran' into 'main'

DT: Fix Fortran binding

See merge request petsc/petsc!7396

DT: Fix Fortran binding
- Add finclude/petscdt.h
- Add PetscDTNodeType to Fortran
- Turn off binding for PetscFEGeomComplete()

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

Remove some unneeded parentheses

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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Merge branch 'jolivet/fix-ubsan' into 'main'

Pacify UBSan

See merge request petsc/petsc!7158

Sys: add PetscSafePointerPlusOffset() to pacify UBSan

Merge branch 'tisaac/feature-type-generic-petsc-valid-pointer' into 'main'

Implement a type generic PetscValidPointer

See merge request petsc/petsc!6693

Rename PetscValidPointer -> PetscAssertPointer

Merge branch 'jacobf/2023-06-30/enable-doc-lint' into 'main'

Enable docs linting

See merge request petsc/petsc!6667

Lint apply: dm

Merge branch 'jacobf/2022-12-10/petscerrorcode-nodiscard' into 'main'

Feature: Non-discardable PetscErrorCode

See merge request petsc/petsc!5923

Make PetscErrorCode a non-discardable enum

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2022-10-27/fix-dmcoordiate-man/release' into 'release'

fix/update manual pages in various places in src/dm

See merge request petsc/petsc!5784

Fix manual pages in a variety of parts of src/dm

Still many other parts of DM need to have their manual pages updated

Commit-type: housekeeping
/spend 4h

Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners w/o PetscCall()

See merge request petsc/petsc!5561

Remove braces from one-liners w/o PetscCall()