Merge branch 'jrwrigh/dm_box_label' into 'main'

Plex: Add box labeling to simplex, input meshes

See merge request petsc/petsc!7741

plex: Print out labels in sorted stratum order

feat(plex): Add DMPlexSetBoxLabel_Internal

Merge branch 'tisaac/feature-petscfe-vector-in-use' into 'main'

Use PETSCFEVECTOR throughout Petsc

See merge request petsc/petsc!6833

PetscFE: add PETSCFEVECTOR

Reductions in the cost of computing, storing, and applying
a Tabulation can be achieved for a finite element space
that is a vector of "scalar" finite elements (the "scala

PetscFE: add PETSCFEVECTOR

Reductions in the cost of computing, storing, and applying
a Tabulation can be achieved for a finite element space
that is a vector of "scalar" finite elements (the "scalar"
element itself could be vector-valued).

Reductions in the cost of storing and applying
a Tabulation can't be realized until the PetscTabulation structure
itself is changed, but at the very least reduction in the cost of
computing a tabulation is possible with a new PetscFEType,
PETSCFEVECTOR.

To complete the interface, we also add PETSCDUALSPACESUM,
a dual space whose dual basis is the sum of other dual bases,
that parallels PETSCSPACESUM (the space and dual space of
a PETSCFEVECTOR are a PETSCSPACESUM and PETSCDUALSPACESUM,
respectively).

To allow the user to specify whether the
basis vector and value components of the PETSCFEVECTOR
of blockwise or interleaved, we also have to make sure
PETSCSPACESUM and PETSCDUALSPACESUM can have blockwise
or interleaved behavior. We add both capabilities.

PETSCFEVECTOR is now used by detecting compatible
vector-valued dual and primal spaces in PetscFECreateFromSpaces().

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Merge branch 'barry/2023-07-15/add-mat-vec-createfromoptions' into 'main'

Add convenience functions VecCreateFromOptions() and MatCreateFromOptions() to...

See merge request petsc/petsc!6711

Add convenience functions VecCreateFromOptions() and MatCreateFromOptions() to reduce the use of specialize creation routines in the examples and thus make it easier for people to use GPU based solve

Add convenience functions VecCreateFromOptions() and MatCreateFromOptions() to reduce the use of specialize creation routines in the examples and thus make it easier for people to use GPU based solvers

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Merge branch 'knepley/feature-hybrid-mass' into 'main'

Plex: Can now specify a mass weighting to hybrid residual

See merge request petsc/petsc!6210

DT: Add quadrature permutations and default quadrature
- Add integration domain to PetscQuadrature
- Add quadrature permutations to DS
- Add default quadrature to DT

Merge branch 'jed/fe-simplex-quadrature' into 'main'

PetscFE simplex quadrature

See merge request petsc/petsc!5525

DMPlex/DT: update tests for efficient simplex quadrature

Merge branch 'jolivet/feature-rm-spaces-plurals' into 'main'

Remove unneeded spaces/plurals

See merge request petsc/petsc!5193

Remove extra spaces and unwanted plurals

Merge branch 'barry/2021-11-24/feature-plex-clearer-cells-per-rank' into 'main'

Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

See merge request

Merge branch 'barry/2021-11-24/feature-plex-clearer-cells-per-rank' into 'main'

Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

See merge request petsc/petsc!4599

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Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

Update the test output files

Commit-type: debugability
\spend 45m

Merge branch 'tisaac/feature-ptrimmed-space' into 'main'

Add PETSCSPACEPTRIMMED and simplify PETSCSPACEPOLYNOMIAL

See merge request petsc/petsc!4469

Update tests

Update tests

Update more tests

Update tests

Update tests

Update numerical output with less noisy basis

Add alt files for partitions of ex42 that seem to differ based on arch

Reset

Update tests

Update tests

Update more tests

Update tests

Update tests

Update numerical output with less noisy basis

Add alt files for partitions of ex42 that seem to differ based on arch

Reset accidental combination of output and alt output for dm_impls_plex_tests-ex42_cube_3_p4

Revert output file that doesn't change with new linear basis

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Merge branch 'knepley/feature-dm-remove-hybrid' into 'master'

Knepley/feature dm remove hybrid

See merge request petsc/petsc!2614

DM+Plex: Example Fixes for cell type rewrite

Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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