Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetC

Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetCtx ctx)

See merge request petsc/petsc!8956

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Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now t

Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now the standard for passing in contexts
- PetscCtxRt ctx is the standard for passing out contexts, including context destroy routines based on PetscCtxDestroyFn

Both of these are typedef to void*

Also removed most use of user and userctx for context arguments now consistently named ctx

Improved documentation on PetscCtx and PetscCtxRt and on how to use contexts (including getting them) from Fortran

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Merge branch 'stefanozampini/oxford' into 'main'

Plex enhancement for firedrake

See merge request petsc/petsc!8876

DMPlex: add rank to the output of HDF5_VIZ

Merge branch 'barry/2025-09-04/deprecate-mpiu-bool' into 'main'

Deprecate MPIU_BOOL which used to be for PETSc's enum Bool but now is just MPI_C_BOOL

See merge request petsc/petsc!8691

Deprecate MPIU_BOOL which used to be for PETSc' enum Bool but now is just MPI_C_BOOL so no longer needs its own name

Merge branch 'jolivet/clang-format-21' into 'main'

clang-format-21

See merge request petsc/petsc!8202

Minor cleanup

One-liners from petsc/petsc!5344 and petsc/petsc!5557

Slightly reworked regular expression

git ls-files -z -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | while IFS= read -r -d '' file; do
cat

One-liners from petsc/petsc!5344 and petsc/petsc!5557

Slightly reworked regular expression

git ls-files -z -- '*.c' '*.cxx' '*.cu' '*.h' '*.hpp' '*.cpp' | while IFS= read -r -d '' file; do
cat $file | tr '\n' '\r' | sed -E 's/\r([ ]*)(for|if|while|else) ([^\r]*)\{\r[ ]*Petsc([a-zA-Z]*)\(([^\r]*)\);\r[ ]*\}\r/\r\1\2 \3Petsc\4(\5);\r/g' | tr '\r' '\n' > ${file}.joe; mv ${file}.joe ${file}
done

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Merge branch 'jolivet/cleanup-symbols' into 'main'

Do not expose unneeded symbols

See merge request petsc/petsc!8335

Merge branch 'knepley/fix-plex-hdf5-compress' into 'main'

Plex+HDF5: Fix compression handling in HDF5 output

See merge request petsc/petsc!8317

Do not expose unneeded symbols

Plex+HDF5: Fix compression handling in HDF5 output
- Add compress flag to HDF5 Viewer
- Add PetscViewerHDF5SetCompress() and PetscViewerHDF5GetCompress()
- Initialize IS compressOutput to PETSC_TRUE

Plex+HDF5: Fix compression handling in HDF5 output
- Add compress flag to HDF5 Viewer
- Add PetscViewerHDF5SetCompress() and PetscViewerHDF5GetCompress()
- Initialize IS compressOutput to PETSC_TRUE and check viewer flag as well
- Turn on viewer compression rather than flip IS flag in Plex output

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Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'stefanozampini/fix-hdf5-plex' into 'main'

VecView_Plex_Local_HDF5_Internal: add missing free

See merge request petsc/petsc!8029

VecView_Plex_Local_HDF5_Internal: add missing free

Merge remote-tracking branch 'origin/release'

Merge branch 'jose/release/linker-warnings' into 'release'

Fix ranlib warnings 'file has no symbols'

See merge request petsc/petsc!7953

Fix ranlib warnings 'file has no symbols'

These warnings appear in macOS when configured --with-shared-libraries=0

/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-nosh

Fix ranlib warnings 'file has no symbols'

These warnings appear in macOS when configured --with-shared-libraries=0

/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(sectionhdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(zhdf5io.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(hdf5io.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(aijhdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(baijfact81.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(densehdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(feceed.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(fvceed.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(plexhdf5xdmf.o) has no symbols

Includes the removal of unnecessary custom fortran stubs.

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