Lint apply: dm

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-05-27/improve-tutorials/release' into 'release'

Minor cleanup of website tutorials

See merge request petsc/petsc!6520

change to consistent use of ch_xxx for chapter names in the docs, instead of a mix of ch_xx and chapter_xx

Merge branch 'jed/dmplex-events' into 'main'

DM: add events for plex creation, projection, transforms, offsets

See merge request petsc/petsc!6301

DM: add events for plex creation, projection, transforms, offsets

These often account for a lot of time, but were not captured in any
events, leading to mystery time in the overall log_view.

Merge branch 'knepley/feature-hybrid-mass' into 'main'

Plex: Can now specify a mass weighting to hybrid residual

See merge request petsc/petsc!6210

Plex: Can now specify a mass weighting to hybrid residual
- This is not a complete fix. We need to match up quadrature points across the interface.

Merge branch 'knepley/feature-ceed-fv' into 'main'

PetscFV: Adding CEED support

See merge request petsc/petsc!6175

PetscFV: Adding CEED support
- Add DMPlexGetLocalOffsetsSupport()

Merge branch 'jacobf/2022-12-10/petscerrorcode-nodiscard' into 'main'

Feature: Non-discardable PetscErrorCode

See merge request petsc/petsc!5923

Make PetscErrorCode a non-discardable enum

Merge branch 'jed/dm-plex-box-sf' into 'main'

DM: parallel periodic box mesh with Z-order

See merge request petsc/petsc!5411

DM libCEED: fix analyzer lints

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2022-11-15/fix-more-dm-man-pages/release' into 'release'

fix more un-updated DMPLEX manual pages

See merge request petsc/petsc!5839

fix more un-updated DMPLEX manual pages

Commit-type: documentation

Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'knepley/feature-plex-periodic-separation' into 'main'

Fix periodicity for higher order coordinates

See merge request petsc/petsc!5333

DM+FE: Create DG coordinate DS and add PetscFECreateFromSpaces()
- Refactor FE creation
- Create DS for DG coordinates
- Error on DG face coordinates

Merge branch 'psanan/docs-sphinx-man-pages' into 'main'

Integrate Man Pages into Sphinx Docs

Closes #1132 and #1015

See merge request petsc/petsc!4989

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (wor

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (word.rstrip(","), comma)

def _process_stripped_line(line):
return " ".join(map(_process_word, line.split()))

start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")

def process_file(filename_full):
with fileinput.FileInput(filename_full, inplace=True) as f:
in_block = False
for line in f:
line_stripped = line.strip()
# end ".seealso blocks" on a blank line or C-style comment close
line_modified = None
if not line_stripped:
in_block = False
elif line_stripped.endswith("*/"):
in_block = False
else:
match = re.match(start_pattern,
line) # not stripped line
if match:
indent = " " * len(match.group(1))
in_block = True
line_modified = match.group(
1) + _process_stripped_line(
match.group(2).strip())
elif in_block:
line_modified = indent + _process_stripped_line(
line_stripped)
if line_modified:
print(line_modified) # prints to the file
else:
print(line, end="") # prints to the file

BASE_DIRS = ["src", "include"]
EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]
EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]

def main():
""" Process everything """
for base in BASE_DIRS:
for root, dirs, files in os.walk(base):
for filename in files:
if os.path.splitext(filename)[1] in EXT:
filename_full = os.path.join(root, filename)
print("FILE ---", filename_full)
process_file(filename_full)
for exclude_dir in EXCLUDE_DIRS:
if exclude_dir in dirs:
dirs.remove(exclude_dir)

if __name__ == "__main__":
main()
```

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