Plex: Add ability to save a mesh transform

Merge branch 'stefanozampini/bs' into 'main'

PetscLayout: set default block size to 1

See merge request petsc/petsc!8226

Merge branch 'knepley/feature-coord-dim-change' into 'main'

Plex: Change of coordinate dimension fully working

See merge request petsc/petsc!8238

Plex: Change of coordinate dimension fully working
- Now coordinate space logic does not depend on being created internally
- For dimension change, need to reset coordinate dimension of the coordinat

Plex: Change of coordinate dimension fully working
- Now coordinate space logic does not depend on being created internally
- For dimension change, need to reset coordinate dimension of the coordinate DM and turn off coordinate projection
- Add coordMap_sinusoid() and DM_COORD_MAP_SINUSOID
- Must copy options prefixes during options phases

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Merge branch 'stefanozampini/plex-crisscross' into 'main'

DMPLEX: add criss-cross mesh constructor

See merge request petsc/petsc!8227

DMPLEX: add 2d box criss-cross mesh

PetscLayout: default block size 1

Merge branch 'jolivet/clang-format-20' into 'main'

clang-format-20

See merge request petsc/petsc!7849

Update to clang-format-20

Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'knepley/feature-embedded-manifold' into 'main'

Plex+PetscFE: Fixes to allow embedded manifolds

See merge request petsc/petsc!8141

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the Pe

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the PetscFEGeomMode
- J and invJ have dE dimensions
- f1, g1, g2, g3 have dE dimensions
- FIX the dim argument of all point function is really dE because it is used to index the gradients
- Clarified behavior of PetscFEGeomGetCellPoint()
- Now -dm_plex_coordinate_dim can change the coordinate dimension of a mesh created by Plex
- Implicit cell geometry must be used when dim != cdim

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Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2024-11-26/improve-man-pages/release' into 'release'

Improve some manual pages in KSP/SNES

See merge request petsc/petsc!8071

Improve some manual pages in KSP/SNES

Merge branch 'bldenton/dmplex-cadrefactor' into 'main'

Plex: Updating CAD support

See merge request petsc/petsc!8060

Updated for Refactored Geometry Aware Mesh Topology

Merge branch 'knepley/fix-plex-interpolate-tensor' into 'main'

Plex: FIx tensor interpolation

See merge request petsc/petsc!8057

Plex: Add flag to prefer tensor ordering in interpolation

Merge branch 'jrwrigh/fix_partition_balance' into 'main'

Plex: Copy partition_balance internally

See merge request petsc/petsc!8045

fix(plex): Copy partition_balance internally

Merge branch 'knepley-main-patch-e1d6' into 'main'

Plex: Add hypercubic docs

See merge request petsc/petsc!8040

Update file plexcreate.c

Merge branch 'knepley/feature-plex-hypercubic-parallel' into 'main'

Plex: Make hypercubic mesh parallel

See merge request petsc/petsc!8036