| #
75a69067
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| 11-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added events for interpolator and injector construction
- Fixed event names
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| #
7d31a15c
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| 10-Jun-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
8d07c9aa
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-fe-gpu'
* knepley/fix-fe-gpu:
DMPlex: Remove unused variable
PetscDS: Renamed from PetscProblem
PetscFE+OpenCL: Inserted barrier after loading geometric data - Initia
Merge branch 'knepley/fix-fe-gpu'
* knepley/fix-fe-gpu:
DMPlex: Remove unused variable
PetscDS: Renamed from PetscProblem
PetscFE+OpenCL: Inserted barrier after loading geometric data - Initialized some variables
PetscFE+OpenCL: Cleaned up offset for writing basis coefficients
DMPlex: Use checking residual evaluation if dmCh is attached
SNES ex12: Added a PetscFE checking mode
PetscFE+OpenCL: Kernel cleanup
PetscFE+OpenCL: We need to sync local memory, not global
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| #
9f892594
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
...
show more ...
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| #
c2e5ce88
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Remove unused variable
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| #
e9d4ef1b
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscDS: Renamed from PetscProblem
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| #
29f8b4da
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
show more ...
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| #
6f4eac71
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscDS: Renamed from PetscProblem
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| #
d56a2bef
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
show more ...
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| #
2764a2aa
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscDS: Renamed from PetscProblem
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| #
aa7da3c4
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| 08-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed allocation
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| #
7c927364
|
| 07-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Support for injection from more complicated discretizations
- Added DMPlexMatGetClosureIndicesRefined()
- Added DMPlexComputeInjectorFEM()
- Fixed check
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| #
0c010903
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| 07-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell r
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
PetscFE+OpenCL: Make more respectable elasticity
PetscFE+OpenCL: Add flag for printing kernel
...
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| #
08f11eef
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| 05-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Use checking residual evaluation if dmCh is attached
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| #
dfd65c77
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| 05-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class: (34 commits)
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSecti
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class: (34 commits)
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
PetscFE+OpenCL: Make more respectable elasticity
PetscFE+OpenCL: Add flag for printing kernel
DMPlex: Fixes to DMPlexProjectField()
PetscFE: Fix work arrays
PetscFE+OpenCL: Fix interface updates
DMDT: Fix complex problems
...
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| #
4907a4d7
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| 03-Jun-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged upstream/master to feature-dmmoab
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| #
299992b9
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| 03-Jun-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merge remote-tracking branch 'upstream/master'
|
| #
326413af
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| 03-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix for DMPlexProjectField()
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| #
3bc3b0a0
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| 03-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixes for DMPlexProjectField()
|
| #
3113607c
|
| 02-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixes to DMPlexProjectField()
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| #
adbe6fbb
|
| 28-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added DMPlexTSComputeIFunction()
- Fixed docs for the SNES version
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| #
b015001c
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| 28-May-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
gfortran: remove 132 char limit from f90 free-form
SNES: Set up matrix-free *after* copying the user Jacobian to snes->pc
DMPlex-Gmsh: Use trueNumCells when building the coordinate section
Sys: Got guard logic reversed
Sys: The #define guard for PetscMalloc*() must match the one for PetscFree*()
PetscFV: I hate fucking complex
removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory
fix test of DMLocalToGlobalBegin/End and add actual test cases
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK
lower high water mark of constructing parallel scatter by allocating only as much room in svalues as needed
owner in VecScatter construction is the rank, therefor can use PetscMPIInt to hold it do not PetscInt
another reuse of allocated array in 2d/3d DMDA create
improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()
PetscFV: Another complex fix
DMPlex+TS: Fixing types
ISIdentity() was wrong for block IS! Indices are NOT scaled by bs
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
...
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| #
0f2d7e86
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| 28-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Assembly routines now use embedded PetscProblem rather than taking an array of PetscFE
- Changed were verified using SNES ex12 and ex62
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| #
92c494f3
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| 23-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/saws-options
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| #
c945be8d
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| 18-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-fv-class'
* knepley/feature-fv-class: (44 commits)
PetscFV: Another complex fix
DMPlex+TS: Fixing types
PetscFV: Straighten out complex types
TS ex11: Fix casts
Merge branch 'knepley/feature-fv-class'
* knepley/feature-fv-class: (44 commits)
PetscFV: Another complex fix
DMPlex+TS: Fixing types
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
PetscFV: Fix Fortran define
PetscFV: Complex fixes
SNES+DM: Added SNESMonitorFields() - Activated by -snes_monitor_fields
PetscFV: Add Fortran types
SNES ex62: Use new DMPlexAddBoundary() interface - Added declaration of DMPlexComputeL2FieldDiff() - Fixed cast
SNES ex12: Fixed Neumann boundary conditions, and moved to new DMPlexAddBoundary interface() - Now do not automatically mark boundary faces
PetscFV: Fixed Fortran bindings
PetscFV+Plex: Refactored to put reconstruction routines in PetscFV_LeastSquares - Added PetscFVComputeGradient() - Added PetscFVLeastSquaresSetMaxFaces() - Moved last squares fitting routines to PetscFV_LeastSquares, and all the work space
PetscLimiter: Add other implementations
TS ex11: Fixed parallel mesh creation - Distribute after physics - Add output for tests
DMPlex: Fixed bug when using refinement from options - Must copy over the point SF
DMPlex: Distribution should copy over BC info
TS ex11: Added refinement tests
TS ex11: Fix boundary conditions after refinement, set types from command line
DMPlex: Added DMPlexCopyBoundary() - Copy boundary conditions after DMRefine() and DMPlexConstructGhostCells()
TS ex11: Specify boundary label
...
Conflicts:
config/builder.py
include/petscdmplex.h
src/dm/impls/plex/plex.c
src/snes/examples/tutorials/ex62.c
show more ...
|