| #
6322fe33
|
| 29-Jan-2014 |
Jed Brown <jed@jedbrown.org> |
DMPlex: mark two unused functions to quash -Wunused-functions
|
| #
036f3cb5
|
| 26-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into balay/tao-to-petsc
Conflicts:
include/makefile
|
| #
f9cfb505
|
| 26-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into knepley/feature-mat-zerorowscols-baij
|
| #
c7ff62de
|
| 13-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-dif
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
show more ...
|
| #
52d48256
|
| 10-Jan-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
|
| #
85011c6d
|
| 29-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-quad-examples'
|
| #
990c2ad7
|
| 27-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-math-functions' into barry/fix-quad-examples
Conflicts:
src/snes/examples/tutorials/ex22.c
src/sys/classes/random/examples/tutorials/ex2.c
|
| #
8b49ba18
|
| 27-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed direct use of sin(), sqrt(), isnormal() etc from C source code and C examples
needed for __float128 precision
|
| #
ed91c37e
|
| 19-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (319 commits)
SNESGS: Fix for uninitialized variable warning in gssecant.c
DMPlex: Fix for orientation in Gmsh files - Fixed tes
Merge branch 'master' into knepley/feature-dmda-section
* master: (319 commits)
SNESGS: Fix for uninitialized variable warning in gssecant.c
DMPlex: Fix for orientation in Gmsh files - Fixed test output
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dashboard.
ASCII printing of floating point numbers must cast to (double) to support quad precision
configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0]
don't use non-portable and also dependent on floating point precision system level math constants
picky compilers
fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs
replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems
DMDA: Missing header - Damn rebase
DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()
DMDA: Fixed 2D geometry - Should reuse DMPlex routines
DMDA: Fix bug in 2D closure operation for cells
DMDA: Make closure operations also return the size
DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection()
...
Conflicts:
config/builder.py
include/petscdmda.h
src/dm/dt/interface/dtfe.c
src/dm/impls/da/dageometry.c
src/dm/impls/da/dalocal.c
src/dm/impls/plex/plexgeometry.c
show more ...
|
| #
0d414b50
|
| 17-Dec-2013 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
|
| #
9c5a1e1b
|
| 17-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-gmsh
* master: (163 commits)
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dash
Merge branch 'master' into knepley/feature-plex-gmsh
* master: (163 commits)
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dashboard.
ASCII printing of floating point numbers must cast to (double) to support quad precision
configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0]
don't use non-portable and also dependent on floating point precision system level math constants
picky compilers
fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs
replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems
DMDA: Missing header - Damn rebase
DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()
DMDA: Fixed 2D geometry - Should reuse DMPlex routines
DMDA: Fix bug in 2D closure operation for cells
DMDA: Make closure operations also return the size
DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection()
DMDA: Added functions which emulate DMPlex functionality
DMDA: Now DMDAGetNumCells() returns the cells in each direction as well
...
Conflicts:
config/builder.py
show more ...
|
| #
324c91e4
|
| 17-Dec-2013 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'madams/gamg-destroy' into prbrune/pcgamg-classicalinterpolationstrategies
|
| #
578f55a3
|
| 17-Dec-2013 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into madams/gamg-destroy
Conflicts:
src/ksp/pc/impls/gamg/gamg.c
|
| #
3d7bc6b7
|
| 15-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-refine-hex
* master: (68 commits)
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Merge branch 'master' into knepley/feature-plex-refine-hex
* master: (68 commits)
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs
DMDA: Missing header - Damn rebase
DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()
DMDA: Fixed 2D geometry - Should reuse DMPlex routines
DMDA: Fix bug in 2D closure operation for cells
DMDA: Make closure operations also return the size
DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection()
DMDA: Added functions which emulate DMPlex functionality
DMDA: Now DMDAGetNumCells() returns the cells in each direction as well
PetscFE: Added support for tensor product cells in PetscDualSpace_Lagrange
PetscFE: Added tensor product polynomial spaces
example fix /sandbox/petsc/petsc.clone-3/include/petscmath.h(260): error: identifier "PETSC_CXX_STATIC_INLINE" is undefined PETSC_STATIC_INLINE PetscReal PetscAbsScalar(PetscScalar a) {return a < 0.0 ? -a : a;} ^
remove warning in fun3d example "user.F", line 1256: warning: In-place macro substitution leaves line truncated "user.F", line 1259: warning: In-place macro substitution leaves line truncated "user.F", line 1262: warning: In-place macro substitution leaves line truncated
/Users/petsc/petsc.clone-2/src/ksp/ksp/examples/tutorials/ex56.c:59: warning: comparison between signed and unsigned integer expressions
fix examples for portability
fixed to example outputs
fix output for a few examples changed due to changes to -mat_view and not using -snes_monitor_short
...
Conflicts:
src/dm/impls/plex/plexrefine.c
show more ...
|
| #
69d8a9ce
|
| 15-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
|
| #
8c722d37
|
| 10-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/reduce-dmsetup-da-memoryusage
Conflicts:
src/dm/examples/tests/ex15.c
src/dm/examples/tutorials/ex3.c
src/dm/impls/da/da2.c
src/dm/impls/da/da3.c
|
| #
a906b49b
|
| 10-Dec-2013 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged master into barry/update-xxxviewfromoptions
|
| #
edbbd480
|
| 10-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/xcode
|
| #
e0133700
|
| 05-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/saws-push-header-body' into barry/saws-options
|
| #
fb3f26da
|
| 04-Dec-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/malloc-array'
Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (
Merge branch 'jed/malloc-array'
Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (zeroed) memory.
* jed/malloc-array:
Sys: Add pointer casts from (void **) in calls to PetscMalloc1()
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()
Sys: add PetscCalloc[1-7]
Sys: add PetscMalloc1 macro, array allocation without redundant types
PetscMalloc[2-7]: remove type arguments, infer from pointer type
SNESComputeJacobianDefaultColor: fix uninitialized variable
show more ...
|
| #
785e854f
|
| 03-Dec-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Sys: add PetscMalloc1 macro, array allocation without redundant types
The type is inferred from the pointer return type. This patch is
automated via the following script:
git grep -l 'PetscMalloc(
Sys: add PetscMalloc1 macro, array allocation without redundant types
The type is inferred from the pointer return type. This patch is
automated via the following script:
git grep -l 'PetscMalloc(.*sizeof' src | xargs perl -pi -e 's@PetscMalloc\(([^,;]*[^,; ]) *\* *sizeof\([^,;()]+\),@PetscMalloc1($1,@'
This commit contains an additional bug-fix in csrperm.c, fixing pointer
arity. The code was introduced in 2006, but the allocation could not
have been correct at any time. This probably means that
MatDuplicate_SeqAIJPERM has never been tested.
a54129beb540034ba105796c682d589e7e1111f2
Richard Tran Mills <rmills@ornl.gov>
Added MATSEQCSRPERM support for MatDuplicate() and conversion to/from
MATSEQAIJ. Note that these changes are not quite debugged.
show more ...
|
| #
ac74f6dd
|
| 02-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-fem-bd-integrate'
* knepley/fix-fem-bd-integrate:
SNES ex12: Fix Neumann tests - Now using normal from f0, f1 - Turned on 3D test
DMPlex: DMPlex: Fix 1D face geometry i
Merge branch 'knepley/fix-fem-bd-integrate'
* knepley/fix-fem-bd-integrate:
SNES ex12: Fix Neumann tests - Now using normal from f0, f1 - Turned on 3D test
DMPlex: DMPlex: Fix 1D face geometry in DMPlexComputeGeometryFVM_1D_Internal() - Normalize vector
DMPlex: DMPlex: Fix 1D face geometry in DMPlexComputeGeometryFVM_1D_Internal() - Used inward pointing normal
DMPlex: Fix 1D face geometry in DMPlexComputeProjection2Dto1D_Internal() - Used inverse rotation by mistake
SNES ex12: Fixed bug in 3D P2 test cases - I was not marking boundary edges, so these variables were unconstrained
SNES ex12: Fixed newline at the end of test output
SNES ex12: Now complete the boundary label in all circumstances - The boundary integration ignores non-faces
DMPlex: Added determination of the normal for boundary faces
DMPlex: Only allow boundary integration on faces
show more ...
|
| #
244aa513
|
| 28-Nov-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/minor-draw-improvements' into jed/chem
|
| #
a60a936b
|
| 24-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: DMPlex: Fix 1D face geometry in DMPlexComputeGeometryFVM_1D_Internal()
- Normalize vector
|
| #
0194f449
|
| 24-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: DMPlex: Fix 1D face geometry in DMPlexComputeGeometryFVM_1D_Internal()
- Used inward pointing normal
|