Merge branch 'ksagiyam/fix_submesh_coordinates' into 'main'

Ksagiyam/fix submesh coordinates

See merge request petsc/petsc!8353

plex: remove coordFunc from DMPlexCreateCoordinateSpace()

plexsubmesh: make submesh inherit CG/DG coordinate elements

Merge branch 'knepley/fix-plex-hdf5-compress' into 'main'

Plex+HDF5: Fix compression handling in HDF5 output

See merge request petsc/petsc!8317

Plex: Save transform during refinement

Merge branch 'knepley/feature-plextransform-save' into 'main'

Save Plex transform in DM

See merge request petsc/petsc!8263

Plex: Add ability to save a mesh transform

Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'stefanozampini/useless-cast' into 'main'

Remove useless cast

See merge request petsc/petsc!7894

Brain dead fixes for useless casts

Merge branch 'knepley/feature-plex-plot' into 'main'

Plex+Viewer: PETSCVIEWERPYTHON and PyVista support for DMPLEX

See merge request petsc/petsc!7884

Plex+Viewer: Added Python and PyVista viewers
- Enable viewer filename interface for Python viewer
- Add -viewer_python_filename to set the output filename
- Add -dm_plex_transform_active_values to e

Plex+Viewer: Added Python and PyVista viewers
- Enable viewer filename interface for Python viewer
- Add -viewer_python_filename to set the output filename
- Add -dm_plex_transform_active_values to explicitly set values in the label
- Add -dm_plex_option_phases to control sequencing of setup from the command line

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Merge branch 'knepley/fix-plex-coords-tobox' into 'main'

Plex: If the cell type changes, we need to recreate the coordinate discretization

See merge request petsc/petsc!7936

Plex: If the cell type changes, we need to recreate the coordinate discretization
- Thus, now refinement always recreates it

Merge branch 'barry/2024-09-02/rebased-fix-conversion-warnings' into 'main'

Compiler finds (and forbid) casts from higher precision integers to lower

See merge request petsc/petsc!7806

Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in th

Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in the CI

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Merge branch 'barry/2024-04-13/fix-sowing-strings' into 'main'

Update PETSc to use sowing bfort that handles string arguments and PETSC_NULL_INT

See merge request petsc/petsc!7480

Update source code removing all unneeded /*@C and associated manual stubs and interfaces

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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Merge branch 'knepley/fix-plex-highorder-coords' into 'main'

Cleanup coordinate mappings for high order

See merge request petsc/petsc!7207

Plex: Use same coordinate degree for refined mesh

Merge branch 'knepley/fix-plex-create-and-view' into 'main'

Fixes for Plex creation and viewing

See merge request petsc/petsc!7159

Plex: Allow user to set active label for transform
- Fix diagnostic view