Merge branch 'barry/2022-04-24/rm-petsccheckfalse-dm' into 'main'

Remove PetscCheckFalse from use in the src/dm directory

Closes #1141

See merge request petsc/petsc!5160

Remove PetscCheckFalse from use in the src/dm directory

Commit-type: housekeeping
/45m

Merge branch 'jacobf/2022-04-05/petscattrformat-all-the-rest' into 'main'

Enable PETSC_ATTRIBUTE_FORMAT()

See merge request petsc/petsc!5085

Enable PETSC_ATTRIBUTE_FORMAT()

Merge branch 'jolivet/feature-less-checkfalse' into 'main'

Dividing by four the number of PetscCheckFalse()

See merge request petsc/petsc!5072

Remove some PetscCheckFalse()

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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chkerr and friends wrapped

Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()

add PetscAssert() and PetscAssertFalse()

SETERRQ[1-9]+ begone

Merge branch 'knepley/feature-plex-multiple-hybrid' into 'main'

DM+FE: Allow multiple cohesive fields

See merge request petsc/petsc!4616

DM+FE: Allow multiple cohesive fields
- Changed name from "hybrid" cell to "cohesive" cell
- Fixed check for cohesive field in PetscFE and DM
- Fixed DMCreateDS() for new scheme
- Added PetscDSIsCohe

DM+FE: Allow multiple cohesive fields
- Changed name from "hybrid" cell to "cohesive" cell
- Fixed check for cohesive field in PetscFE and DM
- Fixed DMCreateDS() for new scheme
- Added PetscDSIsCohesive() and PetscDSGetNumCohesive()
- Replaced PetscDSGetHybrid() with PetscDSGetCohesive() and
PetscDSSetHybrid() with PetscDSSetCohesive()
- Added PetscDSGetFieldOffsetCohesive()
- Fixed hybrid Jacobian integration
- Hybrid Jacobian integration needs to know the side of the interface, just like residual integration
- Needs to use cohesive field offsets
- Update takes the side as an argument

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Merge branch 'knepley/feature-orientation-rethink' into 'main'

Plex: Rethink Plex orientation

See merge request petsc/petsc!4218

DM: New idea for cell orientations
- Add DMPolytopeTypeGetNumArrangments()
- Add DMPolytopeTypeGetArrangment()
- Add DMPolytopeTypeGetVertexArrangment()
- Add DMPolytopeTypeComposeOrientation()
- Add

DM: New idea for cell orientations
- Add DMPolytopeTypeGetNumArrangments()
- Add DMPolytopeTypeGetArrangment()
- Add DMPolytopeTypeGetVertexArrangment()
- Add DMPolytopeTypeComposeOrientation()
- Add DMPolytopeTypeComposeOrientationInv()
- Add DMPolytopeGetOrientation()
- Add DMPolytopeGetVertexOrientation()
- Inversion now uses just negation instead of face size
- Remove DMPlexOrientCell(), DMPlexReverseCell(), DMPlexCompareOrientations()
- Add DMPlexOrientPoint()
- Add MPIU_4INT and MPI_4INT
- Rewrote transitive closure
- DMPlexGetTransitiveClosure_Depth1_Static() now correctly handles ornt
- PetscDualSpaceLagrange and PetscSection use the number of arragnements and not the cone size
- Update examples

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Merge branch 'knepley/feature-ds-residualbd-key' into 'main'

DS+FE+Doc: Make BdResidual take a key

See merge request petsc/petsc!3761

DM+Plex: Boundary integration functions are now stored in a PetscWeakForm held in the Boundary object
- Boundary residual/Jacobian functions now take a form key
- Now store DMLabel in DSBoundary
- Im

DM+Plex: Boundary integration functions are now stored in a PetscWeakForm held in the Boundary object
- Boundary residual/Jacobian functions now take a form key
- Now store DMLabel in DSBoundary
- Improved Boundary, Weak Form, and DS viewers
- Remove DMCopyBoundary(), DMCopyDisc() is sufficient
- Need DMTransferDS_Internal() to create new DS with label in the correct DM
- Correct all DMAddBoundary() in tests
- Allow DMBoundary to hold just a label name if necessary since p4est is missing labels in a lot of places
- Fix propagating coordinate dimension in DS

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Merge branch 'knepley/fix-dm-section-definition' into 'master'

DM: Allow sections to be defined over only non-tensor cells - This is needed for PyLith

See merge request petsc/petsc!3403

DM: Allow sections to be defined over only non-tensor cells - This is needed for PyLith

Merge branch 'knepley/feature-plex-adapt-example' into 'master'

Knepley/feature plex adapt example

See merge request petsc/petsc!3240

Plex: We should allow variables on prism cells if no hybrid DS is involved
- This allows -dm_partition_view to work with prisms

Merge branch 'rlwalker/feature-plex-example-poroelasticity-cryer' into 'master'

Rlwalker/feature plex example poroelasticity cryer

See merge request petsc/petsc!3013

Plex: Need to add BC for the solution time derivative in TS problems
- Added DMPlexInsertTimeDerivativeBoundaryValues()
- Added time derivative of the solution argument to DMAddBoundary(),
DMGetBou

Plex: Need to add BC for the solution time derivative in TS problems
- Added DMPlexInsertTimeDerivativeBoundaryValues()
- Added time derivative of the solution argument to DMAddBoundary(),
DMGetBoundary(), PetscDSAddBoundary(), PetscDSUpdateBoundary(),
PetscDSGetBoundary()

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