Merge branch 'jacobf/2022-04-05/petscattrformat-all-the-rest' into 'main'

Enable PETSC_ATTRIBUTE_FORMAT()

See merge request petsc/petsc!5085

Enable PETSC_ATTRIBUTE_FORMAT()

Merge branch 'barry/2022-04-01/fix-petsc-options-begin-end/release' into 'main'

Remove bogus error returns from Begin/End() macros

See merge request petsc/petsc!5069

Cleanup of introduction of PetscCall()

* remove bogus error flags from XXXBegin()/End() macros such as PetscOptionsBegin()/End()

* rename for consistency certain XXXBegin()/End() macros such as Mat

Cleanup of introduction of PetscCall()

* remove bogus error flags from XXXBegin()/End() macros such as PetscOptionsBegin()/End()

* rename for consistency certain XXXBegin()/End() macros such as MatPreallocateInitialize()/Finalize()

* fix many lingering ierr = XXX that arose from multiline function calls

* sync slepc/hpddm - to use snapshots with the same changes

Commit-type: error-checking, style-fix
/spend 8h

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Merge branch 'stefanozampini/fix-glvis-hosimplex' into 'main'

Fix high-order meshes viz

See merge request petsc/petsc!5037

DMPlexCreateCoordinateSpace: do not attach FE since projection will think that coordinates are up-to-date

Merge branch 'knepley/feature-plex-io-tests' into 'main'

Cleaning up some Plex I/O

See merge request petsc/petsc!5013

Plex: tutorials ex2 subsumed by tests ex1

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+

PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+ return 0;

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chkerr and friends wrapped

Merge branch 'knepley/fix-plex-gmsh-labels' into 'main'

Plex+Gmsh: Correctly set label values for nodes

See merge request petsc/petsc!4976

Plex+Gmsh: Correctly set label values for nodes - Use either physical names or default labels

Merge branch 'jed/plex-extrude-check-faces' into 'main'

DMPlex: fix topology for extrusion

See merge request petsc/petsc!4966

DMPlex: add failing test for extrusion

Merge branch 'knepley/feature-plex-distribute-default' into 'main'

Plex: Change default to automatic distribution

See merge request petsc/petsc!4843

Plex: Change default to automatic distribution - Add DMPlexDistributeGet/SetDefault() to change this - Add DMPlexCopy_Internal() to keep state in Plex object consistent

Merge branch 'knepley/feature-plex-gmsh-8quads' into 'main'

Plex+Gmsh: Now read in 8-node quads

See merge request petsc/petsc!4838

Plex ex1: Add test for Gmsh 8-node quads

Merge branch 'knepley/feature-plex-csr-overlap' into 'main'

Plex: Add a nother alternative for CSR grph creation

See merge request petsc/petsc!4527

Plex: Add a nother alternative for CSR grph creation

Merge branch 'knepley/feature-plex-extrude-symmetric' into 'main'

Plex: DMPlexExtrude() can now symmetrically extrude

See merge request petsc/petsc!4367

DM: Now extrusion is like DMRefine() and implemented through DMPlexTransform - DMExtrude() replaces DMPlexExtrude() - Added an extrusion transformation - Added DMPlexTransformSetDimensions() and setd

DM: Now extrusion is like DMRefine() and implemented through DMPlexTransform - DMExtrude() replaces DMPlexExtrude() - Added an extrusion transformation - Added DMPlexTransformSetDimensions() and setdimensions function - DMPlexTransformMapCoordinates() and DMPlexSnapToGeomModel() now take the coordinate dimension - -dm_extrude replaces -dm_plex_extrude_layers

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Merge branch 'jed/dmplex-mesh-naming' into 'main'

DMPlex: more accurate mesh names for examples and VTK output

See merge request petsc/petsc!4132