Merge branch 'jrwrigh/dm_box_label' into 'main'

Plex: Add box labeling to simplex, input meshes

See merge request petsc/petsc!7741

plex: Print out labels in sorted stratum order

Merge branch 'barry/2021-11-24/feature-plex-clearer-cells-per-rank' into 'main'

Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

See merge request

Merge branch 'barry/2021-11-24/feature-plex-clearer-cells-per-rank' into 'main'

Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

See merge request petsc/petsc!4599

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Fix DMView_Plex_ASCII to have clearer indications of what the numbers after i-cells are (per rank)

Update the test output files

Commit-type: debugability
\spend 45m

Merge branch 'knepley/feature-plex-ceed-integration' into 'main'

Plex: Initial CEED integration

See merge request petsc/petsc!3918

Plex: Update examples to use new creation interface

Merge branch 'barry/2021-02-02/petscsf-communication-specific' into 'main'

PetscSFView() never called viewer for the specific type (bug), hence many...

See merge request petsc/petsc!3606

PetscSFView() never called viewer for the specific type (bug), hence many output files were incorrect.

Added PetscSFView() support for basic MPI implementation and binary viewer saves communication

PetscSFView() never called viewer for the specific type (bug), hence many output files were incorrect.

Added PetscSFView() support for basic MPI implementation and binary viewer saves communication data to binary file.
This new viewer shows exactly how much data is sent from each rank to the other ranks
allowing fiting various performanace models to the data.

This uses MatView() to save the PetscSF data, but since Mat is above PetscSF in the software stack
the code will not work with multiple PETSc libraries. How should this be managed if one wishes to preserve the
traditionl PETSc algorithm stack?

Commit-type: bug-fix, feature
Funded-by: brain project
Project: brain project
spend 1h

Update sfbasic.c save the transpose of the matrix since that indicates the sends for each rank which is easier to understand

Enable PetscSFView_Basic_PatternAndSizes only with single library

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Merge branch 'knepley/feature-dm-remove-hybrid' into 'master'

Knepley/feature dm remove hybrid

See merge request petsc/petsc!2614

DM+Plex: Example Fixes for cell type rewrite

Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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