Test: globsearch was changed to search

Plex: Fix orientation of boundary extrusion
- Allow DMPlexExtrude() to take a label argument
- Allow transforms to reorient the highest dimensional cells

checkbadSource: forbid empty output_file not named output/empty.out

Merge branch 'knepley/feature-plex-shp' into 'main'

Plex: Add Shapefile support

See merge request petsc/petsc!8558

Plex ex1: Added Shapefile test

Remove explicitly listed empty files and switch to output/empty.out

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2025-07-01/fix-dmplex-compute-cell-geometry-fem/release' into 'release'

Fix DMPlexComputeCellGeometryFEM() manual page and argument list so that...

See merge request petsc/petsc

Merge branch 'barry/2025-07-01/fix-dmplex-compute-cell-geometry-fem/release' into 'release'

Fix DMPlexComputeCellGeometryFEM() manual page and argument list so that...

See merge request petsc/petsc!8512

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Merge branch 'ksagiyam/fix_submesh_cdim' into 'main'

submesh: use correct block sizes for CG and DG coordinates

See merge request petsc/petsc!8539

Merge branch 'knepley/feature-plex-stl' into 'main'

Plex: Add STL reader

See merge request petsc/petsc!8494

submesh: use correct block sizes for CG and DG coordinates

Merge remote-tracking branch 'origin/release'

Fix DMPlexComputeCellGeometryFEM() manual page and argument list so that correct Fortran bindings are generated.

Reported-by: Noam T

fortran no semicolon at end of line

Remove all unneeded ; at end of Fortran source code line

Add checkbadSource to check for semicolon at the end of lines

Comment is no properly ! commented in test example test region

Plex ex1: Added STL test

plexsubmesh: add tests for submesh CG/DG coordinates

plexsubmesh: make submesh inherit CG/DG coordinate elements

DMPlexTransform: Allow for plex meshes that do not use standard ordering

DMPlexTransform assumed that the order of points would be cells->vertices->edges (in 2D).
Some cases, such as a DMForest conv

DMPlexTransform: Allow for plex meshes that do not use standard ordering

DMPlexTransform assumed that the order of points would be cells->vertices->edges (in 2D).
Some cases, such as a DMForest converted to a DMPlex, might have cells->edges->vertices, which results
in points being incorrectly flagged as out-of-range. The new cell type order function has been updated to order cell types by the ordering in the DMPlex.

Added additional tests for DMForest->DMPlex during extrusion.

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All typedef for functions are of the form (XXXXFn)(...) not (*XXXXyyyy)(....)

Plex: Make integration functions public
- Rename
DMPlexComputeResidual_Internal() --> DMPlexComputeResidualForKey()
DMPlexComputeJacobian_Internal() --> DMPlexComputeJacobianByKey()
DMPlexCompu

Plex: Make integration functions public
- Rename
DMPlexComputeResidual_Internal() --> DMPlexComputeResidualForKey()
DMPlexComputeJacobian_Internal() --> DMPlexComputeJacobianByKey()
DMPlexComputeJacobian_Action_Internal() --> DMPlexComputeJacobianActionByKey()
DMPlexComputeResidual_Hybrid_Internal() --> DMPlexComputeResidualHybridByKey()
DMPlexComputeJacobian_Hybrid_Internal() --> DMPlexComputeJacobianHybridByKey()

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Merge branch 'jolivet/cleanup-symbols' into 'main'

Do not expose unneeded symbols

See merge request petsc/petsc!8335

Do not expose unneeded symbols

Plex: Fix hybrid integration
- Add DMFieldCreateDefaultFaceQuadrature() and PetscFEExpandFaceQuadrature()
- Add neighbor geometry to PetscFEIntegrateHybridResidual_Basic(), PetscFEIntegrateHybridJaco

Plex: Fix hybrid integration
- Add DMFieldCreateDefaultFaceQuadrature() and PetscFEExpandFaceQuadrature()
- Add neighbor geometry to PetscFEIntegrateHybridResidual_Basic(), PetscFEIntegrateHybridJacobian_Basic() and PetscFEEvaluateFieldJets_Hybrid_Internal()
- Add cell geometry to PetscFEIntegrateHybridResidual() and PetscFEIntegrateHybridJacobian()

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Plex: Fix bug with cohesive transform
- Add member function ordersupports to DMPlexTransform
- Add DMPlexTransformOrderSupports_Cohesive()