History log of /petsc/src/dm/interface/ (Results 1126 – 1150 of 1496)
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ab2453f008-May-2014 Matthew G. Knepley <knepley@gmail.com>

PetscLimiter: Initial checkin
- Its not clear that I have the correct interface, we may want to do the transformation to f inside


/petsc/config/builder.py
/petsc/include/petsc-private/petscfvimpl.h
/petsc/include/petscfv.h
/petsc/include/petscfvtypes.h
/petsc/include/petscts.h
/petsc/src/dm/dt/interface/dtfv.c
dlregisdmdm.c
dmregall.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/output/ex11_8.out
/petsc/src/ts/utils/dmplexts.c
/petsc/src/ts/utils/makefile
f62f30fa02-May-2014 Matthew G. Knepley <knepley@gmail.com>

PetscFV: Initial checkin
- Added an Upwind implementation


/petsc/bin/maint/confignightly/churn2
/petsc/bin/maint/confignightly/petsc-mini4
/petsc/bin/maint/generatefortranstubs.py
/petsc/bin/pythonscripts/petsc_gen_xdmf.py
/petsc/conf/test
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/metis.py
/petsc/config/PETSc/packages/parmetis.py
/petsc/config/PETSc/packages/sowing.py
/petsc/config/builder.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/include/finclude/petscmatdef.h
/petsc/include/mpiuni/mpi.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/fortranimpl.h
/petsc/include/petsc-private/isimpl.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/petscfvimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/include/petscfv.h
/petsc/include/petscfvtypes.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscsnes.h
/petsc/include/petsctao.h
/petsc/include/petsctime.h
/petsc/include/petscversion.h
/petsc/include/petscviewerhdf5.h
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/dt/interface/makefile
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
dlregisdmdm.c
dmregall.c
/petsc/src/docs/tao_tex/manual/part2.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/saws.html
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/color/impls/jp/jp.c
/petsc/src/mat/color/impls/makefile
/petsc/src/mat/color/interface/ftn-custom/zmatcoloringf.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/color/interface/matcoloringregi.c
/petsc/src/mat/color/utils/makefile
/petsc/src/mat/color/utils/weights.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex15.c
/petsc/src/mat/examples/tests/ex30.c
/petsc/src/mat/examples/tests/ex68.c
/petsc/src/mat/examples/tests/ex7.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/examples/tests/output/ex152_1.out
/petsc/src/mat/examples/tests/output/ex152_2.out
/petsc/src/mat/examples/tests/output/ex15_1.out
/petsc/src/mat/examples/tests/output/ex30_1.out
/petsc/src/mat/examples/tests/output/ex30_2.out
/petsc/src/mat/examples/tests/output/ex68_1.out
/petsc/src/mat/examples/tests/output/ex7_1.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/wbm.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex16.c
/petsc/src/snes/examples/tutorials/ex31.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex67.c
/petsc/src/snes/examples/tutorials/ex72.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/examples/tutorials/output/ex12_39.out
/petsc/src/snes/examples/tutorials/output/ex12_41.out
/petsc/src/snes/examples/tutorials/output/ex12_42.out
/petsc/src/snes/examples/tutorials/output/ex19_greedy_coloring.out
/petsc/src/snes/examples/tutorials/output/ex62_26.out
/petsc/src/snes/examples/tutorials/output/ex62_27.out
/petsc/src/snes/examples/tutorials/output/ex62_28.out
/petsc/src/snes/examples/tutorials/output/ex62_29.out
/petsc/src/snes/examples/tutorials/output/ex62_30.out
/petsc/src/snes/examples/tutorials/output/ex62_31.out
/petsc/src/snes/examples/tutorials/output/ex62_32.out
/petsc/src/snes/examples/tutorials/output/ex62_33.out
/petsc/src/snes/examples/tutorials/output/ex62_34.out
/petsc/src/snes/examples/tutorials/output/ex62_35.out
/petsc/src/snes/impls/nasm/aspin.c
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/impls/test/snestest.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/mpiuni/makefile
/petsc/src/sys/mpiuni/mpitime.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/ftn-custom/zoptionsf.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/time/ftn-custom/zptimef.c
/petsc/src/sys/time/makefile
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/utils/vecio.c
/petsc/systems/Apple/OSX/bin/arch-osx-debug.py
/petsc/systems/Apple/OSX/bin/makeall
b3fc930001-May-2014 Vijay Mahadevan <vijay.m@gmail.com>

Merge remote-tracking branch 'origin/master' into feature-dmmoab


/petsc/bin/maint/confignightly/churn2
/petsc/bin/maint/confignightly/crank2
/petsc/bin/maint/confignightly/imav
/petsc/bin/maint/confignightly/petsc-mini
/petsc/bin/maint/confignightly/petsc-mini2
/petsc/bin/maint/confignightly/petsc-mini3
/petsc/bin/maint/confignightly/petsc-mini4
/petsc/bin/maint/generatefortranstubs.py
/petsc/bin/pythonscripts/petsc_gen_xdmf.py
/petsc/conf/test
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/__init__.py
/petsc/config/BuildSystem/config/packages/cgns.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/fftw.py
/petsc/config/PETSc/packages/hypre.py
/petsc/config/PETSc/packages/metis.py
/petsc/config/PETSc/packages/openmp.py
/petsc/config/PETSc/packages/parmetis.py
/petsc/config/PETSc/packages/sowing.py
/petsc/config/PETSc/packages/ssl.py
/petsc/config/PETSc/utilities/libraryOptions.py
/petsc/config/PETSc/utilities/sharedLibraries.py
/petsc/config/builder.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-linux-gcc-ifc-cmplx.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/install.py
/petsc/gmakefile
/petsc/include/finclude/ftn-custom/petscdmplex.h90
/petsc/include/finclude/petscmat.h
/petsc/include/finclude/petscmatdef.h
/petsc/include/mpiuni/mpi.h
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/fortranimpl.h
/petsc/include/petsc-private/isimpl.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/sfimpl.h
/petsc/include/petsc-private/tsimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscversion.h
/petsc/include/petscviewer.h
/petsc/include/petscviewerhdf5.h
/petsc/include/petscwebclient.h
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/doublet-tet.msh
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/benchmarks/sizeof.c
/petsc/src/benchmarks/streams/BasicVersion.c
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/benchmarks/streams/PthreadVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/benchmarks/streams/process.py
/petsc/src/contrib/nightlysummary/runhtml.sh
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex16_1.out
/petsc/src/dm/examples/tests/output/ex16_2.out
/petsc/src/dm/examples/tests/output/ex1_1.out
/petsc/src/dm/examples/tests/output/ex24_1.out
/petsc/src/dm/examples/tests/output/ex24_2.out
/petsc/src/dm/examples/tests/output/ex25_1.out
/petsc/src/dm/examples/tests/output/ex25_2.out
/petsc/src/dm/examples/tests/output/ex2_1.out
/petsc/src/dm/examples/tests/output/ex30_1.out
/petsc/src/dm/examples/tests/output/ex30_2.out
/petsc/src/dm/examples/tests/output/ex30_3.out
/petsc/src/dm/examples/tests/output/ex34_1.out
/petsc/src/dm/examples/tests/output/ex4_1.out
/petsc/src/dm/examples/tutorials/output/ex3_1.out
/petsc/src/dm/examples/tutorials/output/ex3_2.out
/petsc/src/dm/examples/tutorials/output/ex3_3.out
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex2f90_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_13.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_14.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_18.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_20.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_21.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_22.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_23.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_24.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_25.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_26.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_27.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_28.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex7_8.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex8_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_5.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F
/petsc/src/dm/impls/plex/examples/tutorials/ex2.c
/petsc/src/dm/impls/plex/examples/tutorials/ex3f90.F
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1f90_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1f90_1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex3f90_0.out
/petsc/src/dm/impls/plex/f90-custom/zplexf90.c
/petsc/src/dm/impls/plex/ftn-custom/makefile
/petsc/src/dm/impls/plex/ftn-custom/zplexinterpolate.c
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexlabel.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpoint.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/shell/dmshell.c
dm.c
dmi.c
/petsc/src/docs/tao_tex/manual/part2.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/developers/index.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/saws.html
/petsc/src/docs/website/documentation/tutorials/index.html
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/examples/tests/ex35.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tests/output/ex11_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex22_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex35_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex35_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcrl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcsrperm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_3.out
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cg/nash/nash.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/cheby/chebyshevimpl.h
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/interface/eige.c
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9b1ec7f909-Apr-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-plex-periodic'

* knepley/feature-plex-periodic:
TS: Allow viewing of TS solutions
DMPlex: Fix comparison for complex
Draw: Fixed bad check
SNES ex62: Enhance ex

Merge branch 'knepley/feature-plex-periodic'

* knepley/feature-plex-periodic:
TS: Allow viewing of TS solutions
DMPlex: Fix comparison for complex
Draw: Fixed bad check
SNES ex62: Enhance ex62 to use tensor-product cells
DMPlex: Now we are correctly creating the Mobius band - Coordinates for uniform refinement are still broken
DMPlex: If domain is periodic, uniform refinement of coordinates will respect this
DMPlex: Allow geometry routines to recognize periodic quads
DMPlex: Added DMPlexLocalizeCoordinates() - This pulls coordinates from vertices to the cell, which allows discontinuities - We use this for periodic problems
DM: Added preliminary support for periodic coordinates - Added DMGet/SetPeriodicity() which is for clipping coordinates to a periodic box
DMPlex: Needed a custom Fortran wrapper for DMPlexInterpolate() because now we require that the incoming mesh be NULL
DMPlex: Fix handling of Fortran NULLs
DMPlex: Updated test output - The DMView was changed
SNES ex12: Cleanup structure - Use PetscFECreateDefault()
PetscFE: Added a view for Basic
SNES ex12: Starting to cleanup test names
SNES ex62: Marked MF tests as broken

show more ...


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/petsc/src/dm/impls/plex/examples/tests/output/ex8_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_5.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1f90_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1f90_1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex3f90_0.out
/petsc/src/dm/impls/plex/f90-custom/zplexf90.c
/petsc/src/dm/impls/plex/ftn-custom/makefile
/petsc/src/dm/impls/plex/ftn-custom/zplexinterpolate.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexrefine.c
dm.c
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/order/sorder.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex16.c
/petsc/src/snes/examples/tutorials/ex4.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/sys/classes/draw/interface/dline.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/interface/index.c
4d2da85007-Apr-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/add-names-for-all-ascii-viewers'


/petsc/bin/maint/confignightly/imav
/petsc/config/BuildSystem/config/compilerFlags.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/packages/fftw.py
/petsc/config/PETSc/packages/hypre.py
/petsc/config/PETSc/packages/openmp.py
/petsc/config/PETSc/utilities/libraryOptions.py
/petsc/config/PETSc/utilities/sharedLibraries.py
/petsc/config/examples/arch-osx-cxx-cmplx-pkgs-64idx.py
/petsc/config/install.py
/petsc/gmakefile
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/sfimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/doublet-tet.msh
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/contrib/nightlysummary/runhtml.sh
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex16_1.out
/petsc/src/dm/examples/tests/output/ex16_2.out
/petsc/src/dm/examples/tests/output/ex1_1.out
/petsc/src/dm/examples/tests/output/ex24_1.out
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/petsc/src/dm/examples/tests/output/ex25_1.out
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/petsc/src/dm/examples/tests/output/ex2_1.out
/petsc/src/dm/examples/tests/output/ex30_1.out
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/petsc/src/dm/examples/tests/output/ex30_3.out
/petsc/src/dm/examples/tests/output/ex34_1.out
/petsc/src/dm/examples/tests/output/ex4_1.out
/petsc/src/dm/examples/tutorials/output/ex3_1.out
/petsc/src/dm/examples/tutorials/output/ex3_2.out
/petsc/src/dm/examples/tutorials/output/ex3_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex2f90_0.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/developers/index.html
/petsc/src/ksp/ksp/examples/tests/ex35.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tests/output/ex11_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex22_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex35_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex35_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcrl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcsrperm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_3.out
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cg/nash/nash.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/cheby/chebyshevimpl.h
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/interface/xmon.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/tfs/xxt.c
/petsc/src/ksp/pc/impls/tfs/xyt.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/color/impls/greedy/makefile
/petsc/src/mat/color/impls/makefile
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/color/interface/matcoloringregi.c
/petsc/src/mat/color/utils/valid.c
/petsc/src/mat/examples/tests/ex112.c
/petsc/src/mat/examples/tests/ex136.c
/petsc/src/mat/examples/tests/ex142.c
/petsc/src/mat/examples/tests/ex143.c
/petsc/src/mat/examples/tests/ex144.c
/petsc/src/mat/examples/tests/ex146.c
/petsc/src/mat/examples/tests/ex147.c
/petsc/src/mat/examples/tests/ex148.c
/petsc/src/mat/examples/tests/ex153.c
/petsc/src/mat/examples/tests/ex155.c
/petsc/src/mat/examples/tests/ex157.c
/petsc/src/mat/examples/tests/ex158.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex114_2.out
/petsc/src/mat/examples/tests/output/ex114_3.out
/petsc/src/mat/examples/tests/output/ex134_1.out
/petsc/src/mat/examples/tests/output/ex136_1.out
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/petsc/src/mat/examples/tests/output/ex139_1.out
/petsc/src/mat/examples/tests/output/ex13_1.out
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/petsc/src/mat/examples/tests/output/ex148.out
/petsc/src/mat/examples/tests/output/ex151_1.out
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/petsc/src/mat/examples/tests/output/ex18_1.out
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/petsc/src/mat/examples/tests/output/ex18_11.out
/petsc/src/mat/examples/tests/output/ex18_13.out
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/petsc/src/mat/examples/tests/output/ex18_8.out
/petsc/src/mat/examples/tests/output/ex22_1.out
/petsc/src/mat/examples/tests/output/ex52_1.out
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/petsc/src/mat/examples/tests/output/ex52_4.out
/petsc/src/mat/examples/tests/output/ex59_2.out
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/petsc/src/mat/examples/tests/output/ex63_1.out
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/petsc/src/mat/examples/tests/output/ex6_1.out
/petsc/src/mat/examples/tests/output/ex79f_1.out
/petsc/src/mat/examples/tests/output/ex7_1.out
/petsc/src/mat/examples/tests/output/ex93_2.out
/petsc/src/mat/examples/tests/output/ex98.out
/petsc/src/mat/examples/tests/output/ex9_2.out
/petsc/src/mat/examples/tests/output/ex9_3.out
/petsc/src/mat/examples/tutorials/output/ex15_2.out
/petsc/src/mat/impls/aij/mpi/clique/clique.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/umfpack/umfpack.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/ex42.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/output/ex12_10.out
/petsc/src/snes/examples/tutorials/output/ex12_12.out
/petsc/src/snes/examples/tutorials/output/ex12_3.out
/petsc/src/snes/examples/tutorials/output/ex12_43.out
/petsc/src/snes/examples/tutorials/output/ex12_44.out
/petsc/src/snes/examples/tutorials/output/ex12_7.out
/petsc/src/snes/examples/tutorials/output/ex19_10.out
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/petsc/src/snes/examples/tutorials/output/ex1_2_sol.out
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/petsc/src/snes/examples/tutorials/output/ex62_38.out
/petsc/src/snes/examples/tutorials/output/ex62_39.out
/petsc/src/snes/examples/tutorials/output/ex62_40.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/impls/win32/win32draw.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/utils/axis.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/classes/draw/utils/hue.c
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/examples/tests/ex25.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex1_1.out
/petsc/src/sys/examples/tests/output/ex25.out
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/pname.c
/petsc/src/sys/webclient/box.c
/petsc/src/sys/webclient/client.c
/petsc/src/sys/webclient/globus.c
/petsc/src/sys/webclient/google.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmlocalts.c
/petsc/src/ts/utils/makefile
/petsc/src/vec/is/ao/examples/tests/output/ex1_1.out
/petsc/src/vec/is/ao/examples/tests/output/ex1_2.out
/petsc/src/vec/is/ao/examples/tests/output/ex1_3.out
/petsc/src/vec/is/ao/examples/tests/output/ex2_1.out
/petsc/src/vec/is/ao/examples/tests/output/ex2_2.out
/petsc/src/vec/is/ao/examples/tests/output/ex2_3.out
/petsc/src/vec/is/ao/examples/tests/output/ex7_1.out
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/is/examples/tests/output/ex6_3.out
/petsc/src/vec/is/is/examples/tutorials/output/ex1.out
/petsc/src/vec/is/is/examples/tutorials/output/ex1f.out
/petsc/src/vec/is/is/examples/tutorials/output/ex1f90.out
/petsc/src/vec/is/is/examples/tutorials/output/ex2.out
/petsc/src/vec/is/is/examples/tutorials/output/ex2f.out
/petsc/src/vec/is/is/examples/tutorials/output/ex3.out
/petsc/src/vec/is/is/examples/tutorials/output/ex3f90.out
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/is/sf/interface/sftype.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/makefile
/petsc/src/vec/vec/examples/tests/output/ex37_1.out
/petsc/src/vec/vec/examples/tests/output/ex37_2.out
/petsc/src/vec/vec/examples/tests/output/ex37_3.out
/petsc/src/vec/vec/examples/tests/output/ex37_4.out
/petsc/src/vec/vec/examples/tests/output/ex38_1.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/nest/vecnest.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
c6b900c603-Apr-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Added preliminary support for periodic coordinates
- Added DMGet/SetPeriodicity() which is for clipping coordinates to a periodic box


/petsc/bin/maint/confignightly/imav
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/PETSc/packages/fftw.py
/petsc/config/PETSc/packages/hypre.py
/petsc/config/PETSc/packages/openmp.py
/petsc/config/PETSc/utilities/sharedLibraries.py
/petsc/config/builder.py
/petsc/config/examples/arch-osx-cxx-cmplx-pkgs-64idx.py
/petsc/config/install.py
/petsc/gmakefile
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/sfimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscts.h
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/doublet-tet.msh
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
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6bf20b6231-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Handle empty vectors correctly for blocksize determination


/petsc/src/dm/impls/plex/plex.c
dmi.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/ts/utils/dmdats.c
b028818630-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-plex-hdf5'

* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequ

Merge branch 'knepley/feature-plex-hdf5'

* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DMPlex: Label with timestep number since we do not have times
Viewer+HDF5: Added PetscViewerHDF5HasAttribute()
TS: Set output sequence for timesteps
DMPlex: Handle output sequences - Added static to some functions
DM: Add idea of an output sequence - Added DMGet/SetOutputSequenceNumber() - Added doc for outputDM
REVERT TS: Timestep gets set into DMTS
DMPlex: Fix up HDF5 segregation
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
DMPlex: Fix HDF5 timestep handling
DMPlex: Set correct block size on HDF5 field vectors
TS: Timestep gets set into DMTS
DMTS: Added timestep
DMPlex: Fix output of fields - Corrected name - Fixed vector type
DMPlex: Return errors from HDF5 function
DMPlex+Viewer: Now output separate fields for viz - Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields - Added field type determination
Sys+HDF5: Added PetscDataType string and HDF5 support for it
...

Conflicts:
config/BuildSystem/config/packages/__init__.py
src/ts/interface/ts.c

show more ...


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/petsc/src/sys/webclient/examples/tutorials/boxobtainrefreshtoken.c
/petsc/src/sys/webclient/examples/tutorials/boxupload.c
/petsc/src/sys/webclient/examples/tutorials/globusobtaintransfers.c
/petsc/src/sys/webclient/examples/tutorials/googledriveupload.c
/petsc/src/sys/webclient/examples/tutorials/googleobtainrefreshtoken.c
/petsc/src/sys/webclient/examples/tutorials/makefile
/petsc/src/sys/webclient/examples/tutorials/urlshorten.c
/petsc/src/sys/webclient/globus.c
/petsc/src/sys/webclient/google.c
/petsc/src/sys/webclient/makefile
/petsc/src/sys/webclient/textbelt.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/ts/event/makefile
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/examples/tests/ex21.c
/petsc/src/ts/examples/tests/ex22.c
/petsc/src/ts/examples/tests/ex23.c
/petsc/src/ts/examples/tests/makefile
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/makefile
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/general/general.h
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/is/utils/makefile
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/utils/vecio.c
/petsc/src/vec/vec/utils/vsection.c
f4d763aa29-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Add idea of an output sequence
- Added DMGet/SetOutputSequenceNumber()
- Added doc for outputDM


/petsc/config/builder.py
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/isimpl.h
/petsc/include/petscdm.h
/petsc/include/petscis.h
/petsc/include/petscsys.h
/petsc/include/petscviewer.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexlabel.c
dm.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/examples/tutorials/output/ex12_0.out
/petsc/src/snes/examples/tutorials/output/ex12_1.out
/petsc/src/snes/examples/tutorials/output/ex12_10.out
/petsc/src/snes/examples/tutorials/output/ex12_11.out
/petsc/src/snes/examples/tutorials/output/ex12_12.out
/petsc/src/snes/examples/tutorials/output/ex12_13.out
/petsc/src/snes/examples/tutorials/output/ex12_14.out
/petsc/src/snes/examples/tutorials/output/ex12_15.out
/petsc/src/snes/examples/tutorials/output/ex12_16.out
/petsc/src/snes/examples/tutorials/output/ex12_17.out
/petsc/src/snes/examples/tutorials/output/ex12_18.out
/petsc/src/snes/examples/tutorials/output/ex12_19.out
/petsc/src/snes/examples/tutorials/output/ex12_2.out
/petsc/src/snes/examples/tutorials/output/ex12_20.out
/petsc/src/snes/examples/tutorials/output/ex12_21.out
/petsc/src/snes/examples/tutorials/output/ex12_22.out
/petsc/src/snes/examples/tutorials/output/ex12_23.out
/petsc/src/snes/examples/tutorials/output/ex12_24.out
/petsc/src/snes/examples/tutorials/output/ex12_25.out
/petsc/src/snes/examples/tutorials/output/ex12_26.out
/petsc/src/snes/examples/tutorials/output/ex12_27.out
/petsc/src/snes/examples/tutorials/output/ex12_28.out
/petsc/src/snes/examples/tutorials/output/ex12_29.out
/petsc/src/snes/examples/tutorials/output/ex12_3.out
/petsc/src/snes/examples/tutorials/output/ex12_30.out
/petsc/src/snes/examples/tutorials/output/ex12_31.out
/petsc/src/snes/examples/tutorials/output/ex12_32.out
/petsc/src/snes/examples/tutorials/output/ex12_33.out
/petsc/src/snes/examples/tutorials/output/ex12_34.out
/petsc/src/snes/examples/tutorials/output/ex12_35.out
/petsc/src/snes/examples/tutorials/output/ex12_36.out
/petsc/src/snes/examples/tutorials/output/ex12_39.out
/petsc/src/snes/examples/tutorials/output/ex12_4.out
/petsc/src/snes/examples/tutorials/output/ex12_40.out
/petsc/src/snes/examples/tutorials/output/ex12_41.out
/petsc/src/snes/examples/tutorials/output/ex12_42.out
/petsc/src/snes/examples/tutorials/output/ex12_5.out
/petsc/src/snes/examples/tutorials/output/ex12_6.out
/petsc/src/snes/examples/tutorials/output/ex12_7.out
/petsc/src/snes/examples/tutorials/output/ex12_8.out
/petsc/src/snes/examples/tutorials/output/ex12_9.out
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/general/general.h
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/is/utils/makefile
/petsc/src/vec/vec/utils/vecio.c
98c3331e28-Mar-2014 Barry Smith <bsmith@mcs.anl.gov>

Insure that all ASCII viewers for PETSc objects call PetscObjectPrintClassNamePrefixType()


/petsc/bin/FASTMathInstaller.py
/petsc/bin/petscmpiexec
/petsc/conf/test
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/__init__.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/SuiteSparse.py
/petsc/config/PETSc/packages/SuperLU.py
/petsc/config/PETSc/packages/SuperLU_DIST.py
/petsc/config/PETSc/packages/scalapack.py
/petsc/config/PETSc/packages/spai.py
/petsc/config/PETSc/packages/ssl.py
/petsc/config/configure.py
/petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-freebsd-pkgs-opt.py
/petsc/config/examples/arch-linux-gcc-absoft.py
/petsc/config/examples/arch-linux-gcc-ifc.py
/petsc/config/examples/arch-linux-gcc-pgf90.py
/petsc/config/examples/arch-linux-gcc-real-opt.py
/petsc/config/examples/arch-linux-gcc-real.py
/petsc/config/examples/arch-linux-gxx-complex.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-linux-pkgs-opt-threadcomm.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-linux-pkgs-threadcomm.py
/petsc/config/examples/arch-linux-pkgs-valgrind.py
/petsc/config/examples/arch-opensolaris-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-opensolaris-pkgs-opt.py
/petsc/config/examples/arch-osx-10.6-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
/petsc/config/examples/basic/arch-gcc-complex-O.py
/petsc/config/examples/basic/arch-gcc-complex.py
/petsc/config/examples/basic/arch-gcc-real-O.py
/petsc/config/examples/basic/arch-gcc-real.py
/petsc/config/examples/basic/arch-gcc64-complex-O.py
/petsc/config/examples/basic/arch-gcc64-complex.py
/petsc/config/examples/basic/arch-gcc64-real-O.py
/petsc/config/examples/basic/arch-gcc64-real.py
/petsc/config/examples/basic/arch-gxx-complex-O.py
/petsc/config/examples/basic/arch-gxx-complex.py
/petsc/config/examples/basic/arch-gxx-real-O.py
/petsc/config/examples/basic/arch-gxx-real.py
/petsc/config/examples/basic/arch-gxx64-complex-O.py
/petsc/config/examples/basic/arch-gxx64-complex.py
/petsc/config/examples/basic/arch-gxx64-real-O.py
/petsc/config/examples/basic/arch-gxx64-real.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/tsimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscmath.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/include/petscwebclient.h
/petsc/makefile
/petsc/src/benchmarks/streams/BasicVersion.c
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/benchmarks/streams/PthreadVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/benchmarks/streams/process.py
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/circuit/circuitcreate.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex7.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/shell/dmshell.c
dm.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/ksp/examples/tutorials/ex3.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/examples/tutorials/ex11.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/circuit/pflow/pf.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex16.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/makefile
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/pname.c
/petsc/src/sys/webclient/box.c
/petsc/src/sys/webclient/client.c
/petsc/src/sys/webclient/examples/makefile
/petsc/src/sys/webclient/examples/tutorials/boxobtainrefreshtoken.c
/petsc/src/sys/webclient/examples/tutorials/boxupload.c
/petsc/src/sys/webclient/examples/tutorials/globusobtaintransfers.c
/petsc/src/sys/webclient/examples/tutorials/googledriveupload.c
/petsc/src/sys/webclient/examples/tutorials/googleobtainrefreshtoken.c
/petsc/src/sys/webclient/examples/tutorials/makefile
/petsc/src/sys/webclient/examples/tutorials/urlshorten.c
/petsc/src/sys/webclient/globus.c
/petsc/src/sys/webclient/google.c
/petsc/src/sys/webclient/makefile
/petsc/src/sys/webclient/textbelt.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/ts/event/makefile
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/examples/tests/ex21.c
/petsc/src/ts/examples/tests/ex22.c
/petsc/src/ts/examples/tests/ex23.c
/petsc/src/ts/examples/tests/makefile
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/makefile
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/vsectionis.c
9331c7a424-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: DMLoad() now knows about HDF5 input


/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
dm.c
/petsc/src/vec/vec/utils/vecio.c
c26acbde24-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Optimized DMGetOutputDM() to return the DM itself if there are no constraints


/petsc/include/petscis.h
/petsc/include/petscviewerhdf5.h
/petsc/src/dm/impls/plex/plex.c
dm.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/vec/is/utils/vsectionis.c
14f150ff24-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Added the notion of an output DM
- This adds all the dofs constrained by BC to the global vector
- Used for visualization


/petsc/bin/matlab/classes/PetscKSP.m
/petsc/bin/matlab/classes/PetscPC.m
/petsc/bin/matlab/classes/matlabheader.h
/petsc/config/BuildSystem/config/packages/__init__.py
/petsc/config/BuildSystem/config/packages/cgns.py
/petsc/config/PETSc/Configure.py
/petsc/config/builder.py
/petsc/include/finclude/ftn-custom/petscdmplex.h90
/petsc/include/finclude/petscdmdef.h
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmplex.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/include/petscmath.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/include/petscviewer.h
/petsc/include/petscviewerhdf5.h
/petsc/src/dm/dt/examples/tests/ex1.c
/petsc/src/dm/dt/examples/tests/output/ex1_1.out
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_18.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_20.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_21.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_23.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_12.out
/petsc/src/dm/impls/plex/examples/tutorials/ex3f90.F
/petsc/src/dm/impls/plex/examples/tutorials/output/ex3f90_0.out
/petsc/src/dm/impls/plex/f90-custom/zplexf90.c
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexsubmesh.c
dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_0.out
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/agmres/makefile
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/parms/parms.c
/petsc/src/mat/examples/tests/ex126f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/order/spectral.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex7.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/examples/tutorials/output/ex16_3.out
/petsc/src/snes/examples/tutorials/output/ex62_31.out
/petsc/src/snes/examples/tutorials/output/ex62_32.out
/petsc/src/snes/examples/tutorials/output/ex62_33.out
/petsc/src/snes/examples/tutorials/output/ex62_34.out
/petsc/src/snes/examples/tutorials/output/ex62_35.out
/petsc/src/snes/examples/tutorials/output/ex62_36.out
/petsc/src/snes/impls/nasm/aspin.c
/petsc/src/snes/impls/vi/rsaug/makefile
/petsc/src/snes/impls/vi/rsaug/virsaug.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/error/pstack.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex7_1.out
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/vec/is/utils/vsectionis.c
b2533dd122-Mar-2014 Vijay Mahadevan <vijay.m@gmail.com>

Fixing merge conflicts in dmregall.


/petsc/bin/FASTMathInstaller.py
/petsc/bin/maint/generatefortranstubs.py
/petsc/bin/matlab/classes/PetscKSP.m
/petsc/bin/matlab/classes/PetscPC.m
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/petsc/bin/petscmpiexec
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/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/__init__.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/SuiteSparse.py
/petsc/config/PETSc/packages/SuperLU.py
/petsc/config/PETSc/packages/SuperLU_DIST.py
/petsc/config/PETSc/packages/scalapack.py
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/petsc/config/examples/arch-opensolaris-cmplx-pkgs-dbg.py
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/petsc/config/examples/basic/arch-gcc64-real-O.py
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/petsc/config/examples/basic/arch-gxx-complex-O.py
/petsc/config/examples/basic/arch-gxx-complex.py
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/petsc/config/examples/basic/arch-gxx64-complex-O.py
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/petsc/config/examples/basic/arch-gxx64-real-O.py
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/petsc/include/finclude/petscdmdef.h
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/petsc/include/petsc-private/dmmbimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/dtimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/snesimpl.h
/petsc/include/petsc-private/taodmimpl.h
/petsc/include/petscbt.h
/petsc/include/petsccusp.h
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/petsc/include/petscdmcircuit.h
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/petsc/src/dm/dt/examples/tests/ex1.c
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/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/circuit/circuit.c
/petsc/src/dm/impls/circuit/circuitcreate.c
/petsc/src/dm/impls/circuit/makefile
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dadestroy.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/makefile
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/moab/examples/tests/ex2.cxx
/petsc/src/dm/impls/moab/examples/tutorials/ex1.cxx
/petsc/src/dm/impls/moab/examples/tutorials/ex2.cxx
/petsc/src/dm/impls/moab/examples/tutorials/ex3.cxx
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex7.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
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/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcgns.c
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/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexlabel.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
dm.c
dmi.c
dmregall.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
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/petsc/src/ksp/ksp/examples/tutorials/ex21f.F
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/petsc/src/ksp/ksp/examples/tutorials/ex4.c
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/petsc/src/ksp/ksp/examples/tutorials/output/ex56_0.out
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/agmres/makefile
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/parms/parms.c
/petsc/src/mat/color/impls/jp/jp.c
/petsc/src/mat/color/impls/mis/miscoloring.c
/petsc/src/mat/color/utils/valid.c
/petsc/src/mat/examples/tests/ex126f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tutorials/ex11.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/cholmod/makefile
/petsc/src/mat/impls/aij/seq/klu/klu.c
/petsc/src/mat/impls/aij/seq/klu/makefile
/petsc/src/mat/impls/aij/seq/makefile
/petsc/src/mat/impls/aij/seq/umfpack/makefile
/petsc/src/mat/impls/aij/seq/umfpack/umfpack.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/sbaij/seq/cholmod/makefile
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/amd/makefile
/petsc/src/mat/order/spectral.c
/petsc/src/mat/order/sregis.c
/petsc/src/snes/examples/tutorials/circuit/makefile
/petsc/src/snes/examples/tutorials/circuit/pflow/PFReadData.c
/petsc/src/snes/examples/tutorials/circuit/pflow/datafiles/case9.m
/petsc/src/snes/examples/tutorials/circuit/pflow/makefile
/petsc/src/snes/examples/tutorials/circuit/pflow/pf.c
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/petsc/src/snes/examples/tutorials/circuit/pflow/pfoptions
/petsc/src/snes/examples/tutorials/ex12.c
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/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/gs/gsimpl.h
/petsc/src/snes/impls/gs/gssecant.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/ls/ls.c
/petsc/src/snes/impls/nasm/aspin.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/ngmresfunc.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/impls/vi/rsaug/makefile
/petsc/src/snes/impls/vi/rsaug/virsaug.c
/petsc/src/snes/interface/dlregissnes.c
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/error/pstack.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssls.c
/petsc/src/tao/util/tao_util.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex7_1.out
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex25.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/vsectionis.c
5f6acfaf18-Mar-2014 Shri <abhyshr@mcs.anl.gov>

Merge branch 'master' into shri/feature-dm-circuit

Conflicts:
src/dm/impls/makefile


/petsc/.gitignore
/petsc/.mailmap
/petsc/bin/FASTMathInstaller.py
/petsc/bin/maint/asterix-test.sh
/petsc/bin/maint/builddist
/petsc/bin/maint/buildtest
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/petsc/config/PETSc/packages/opencl.py
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/petsc/config/PETSc/packages/saws.py
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/petsc/config/PETSc/packages/spai.py
/petsc/config/PETSc/packages/tetgen.py
/petsc/config/PETSc/packages/viennacl.py
/petsc/config/PETSc/utilities/Regression.py
/petsc/config/PETSc/utilities/arch.py
/petsc/config/PETSc/utilities/dataFilesPath.py
/petsc/config/PETSc/utilities/externalpackagesdir.py
/petsc/config/PETSc/utilities/featureTestMacros.py
/petsc/config/PETSc/utilities/installDir.py
/petsc/config/PETSc/utilities/languages.py
/petsc/config/PETSc/utilities/missing.py
/petsc/config/PETSc/utilities/petscclone.py
/petsc/config/PETSc/utilities/petscdir.py
/petsc/config/PETSc/utilities/scalarTypes.py
/petsc/config/PETSc/utilities/sharedLibraries.py
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/petsc/config/configure.py
/petsc/config/examples/arch-bgp-ibm-opt.py
/petsc/config/examples/arch-c-exodus-dbg-builder.py
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9e8c3d3a11-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Fixed pointer comparison


/petsc/config/builder.py
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ef8fe71d11-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Fix reference counting in DMSetField()


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/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssls.c
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ab15ae4303-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'master' into knepley/feature-plex-fas

* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTransp

Merge branch 'master' into knepley/feature-plex-fas

* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTranspose: fix for lazy block size
mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option.
configure: add FC_DEFINE_FLAG to petscvariables
added a citation for pounders, Stefan finally came through
update to latest netcdf fixes bug that did not allow building on recent Mac OS X
DMPlex: Fixes for CGNS - Fixed loop bounds since CGNS uses closed intervals - Bug with mixed cell types - Typo with coordinates
final updates from nightly tests
fix for countcfunction
removed outdated docs and comments on MatStructure usage removed SAME_PRECONDITIONER since no longer used removed unneed use of MatStructure in Schur complement matrix
removed MatStructure arguments from Tao
fixes for Sundials and fun3d cannot use MPIU_SUM for integer arrays
inplace ILU factorization must update state of inplace matrix to prevent infinite recursion of updating PC
fixes for BDDC by the way not having BDDC always in the testing is going to lead to trouble
the compute Jacobian functions for SNES and TS now do not take a MatStructure flag
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner if the operator changed in the way that SAME_PRECONDITIONER did with KSPSetOperators()
tracks when Mat's have a change in nonzero structure this information can be used by PC to determine how preconditioners must be rebuilt currently only does an error check if the user said same nonzero pattern but actually changed the pattern
completed cleanup of removal of matrix pointers to compute jacobian routines
makefile: Added 'make includegraph' to create an inclusion dependency graph.
Contrib: Updated include-graph.sh script to ignore *.hh files
...

Conflicts:
src/dm/dt/interface/dt.c

show more ...


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/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu
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/petsc/tutorials/python/ex1.c
/petsc/tutorials/python/ex1f.F
aaf1837c03-Mar-2014 Matthew G. Knepley <knepley@gmail.com>

PetscFE: Added Composite class for subdivided reference cells


/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/dtimpl.h
/petsc/include/petsc-private/petscfeimpl.h
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dmregall.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex62.c
061e9cde27-Feb-2014 Vijay Mahadevan <vijay.m@gmail.com>

Merging master with feature-dmmoab. Only conflict was with SOURCECXX specification under impls/moab/makefile.


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/petsc/src/ts/adapt/impls/basic/adaptbasic.c
/petsc/src/ts/adapt/impls/cfl/adaptcfl.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/characteristic/impls/da/slda.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/examples/tests/ex2.c
/petsc/src/ts/examples/tests/ex25.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/examples/tests/ex4.c
/petsc/src/ts/examples/tests/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex1.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex3.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex4.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c
/petsc/src/ts/examples/tutorials/eimex/allen_cahn.c
/petsc/src/ts/examples/tutorials/eimex/ct_vdp_imex.c
/petsc/src/ts/examples/tutorials/ex1.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex12.c
/petsc/src/ts/examples/tutorials/ex13.c
/petsc/src/ts/examples/tutorials/ex14.c
/petsc/src/ts/examples/tutorials/ex15.c
/petsc/src/ts/examples/tutorials/ex16.c
/petsc/src/ts/examples/tutorials/ex17.c
/petsc/src/ts/examples/tutorials/ex19.c
/petsc/src/ts/examples/tutorials/ex1f.F
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/ex20.c
/petsc/src/ts/examples/tutorials/ex21.c
/petsc/src/ts/examples/tutorials/ex22.c
/petsc/src/ts/examples/tutorials/ex22f.F
/petsc/src/ts/examples/tutorials/ex22f_mf.F90
/petsc/src/ts/examples/tutorials/ex23.c
/petsc/src/ts/examples/tutorials/ex24.c
/petsc/src/ts/examples/tutorials/ex25.c
/petsc/src/ts/examples/tutorials/ex26.c
/petsc/src/ts/examples/tutorials/ex27.c
/petsc/src/ts/examples/tutorials/ex29.c
/petsc/src/ts/examples/tutorials/ex2f.F
/petsc/src/ts/examples/tutorials/ex2f.h
/petsc/src/ts/examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex30.cxx
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/ts/examples/tutorials/ex34.c
/petsc/src/ts/examples/tutorials/ex4.c
/petsc/src/ts/examples/tutorials/ex5.c
/petsc/src/ts/examples/tutorials/ex6.c
/petsc/src/ts/examples/tutorials/ex7.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex1.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex6.c
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex8.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c
/petsc/src/ts/f90-mod/petsctsmod.F
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/ts/impls/implicit/alpha/alpha.c
/petsc/src/ts/impls/implicit/gl/gl.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/utils/dmdats.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/is/ao/examples/tests/ex3d/ex3.cxx
/petsc/src/vec/is/ao/examples/tests/ex3d/makefile
/petsc/src/vec/is/sf/examples/tutorials/ex1.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/ex21.c
/petsc/src/vec/vec/examples/tests/ex28.c
/petsc/src/vec/vec/examples/tests/ex43.c
/petsc/src/vec/vec/examples/tests/ex44.c
/petsc/src/vec/vec/examples/tests/makefile
/petsc/src/vec/vec/examples/tests/output/ex3_2.out
/petsc/src/vec/vec/examples/tutorials/ex1.c
/petsc/src/vec/vec/examples/tutorials/ex11.c
/petsc/src/vec/vec/examples/tutorials/ex18.c
/petsc/src/vec/vec/examples/tutorials/ex6.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/makefile
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/nest/vecnest.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/makefile
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqviennacl/viennaclvecimpl.h
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/makefile
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vecmpitoseq.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vec/utils/vsection.c
/petsc/tutorials/python/ex1.c
/petsc/tutorials/python/ex1f.F
6fc3d38019-Feb-2014 Peter Brune <brune@mcs.anl.gov>

Merge branch 'prbrune/dm-destroylinkedlistfix'

* prbrune/dm-destroylinkedlistfix:
DM: Fix for recursive DMDestroy() causing valgrind issues


/petsc/bin/maint/generatefortranstubs.py
/petsc/include/finclude/petsctaodef.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/petscimpl.h
/petsc/include/petsc-private/taoimpl.h
/petsc/include/petsc-private/taolinesearchimpl.h
/petsc/include/petscdmda.h
/petsc/include/petscerror.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscoptions.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petscts.h
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/fdda.c
dm.c
/petsc/src/docs/tao_tex/manual/addsolver.tex
/petsc/src/docs/tao_tex/manual/part1.tex
/petsc/src/docs/tao_tex/manual/part2.tex
/petsc/src/docs/tao_tex/manual/part3.tex
/petsc/src/docs/tao_tex/manual/rosenbrock1.c
/petsc/src/docs/tao_tex/tutorials/nersc/n02.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n03.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n04.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts08.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts09.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts10.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts11.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts12.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/classes/viewer/interface/viewa.c
/petsc/src/sys/objects/state.c
/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/bound/examples/tutorials/makefile
/petsc/src/tao/bound/examples/tutorials/output/plate2_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_3.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_4.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_5.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_6.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_7.out
/petsc/src/tao/bound/examples/tutorials/plate2.c
/petsc/src/tao/bound/examples/tutorials/plate2f.F
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/gpcg/gpcg.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/bound/utils/isutil.c
/petsc/src/tao/complementarity/examples/tutorials/blackscholes.c
/petsc/src/tao/complementarity/examples/tutorials/makefile
/petsc/src/tao/complementarity/examples/tutorials/minsurf1.c
/petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_1.out
/petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2.out
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/complementarity/impls/ssls/ssls.c
/petsc/src/tao/constrained/examples/tutorials/maros.c
/petsc/src/tao/constrained/examples/tutorials/toy.c
/petsc/src/tao/constrained/examples/tutorials/toyf.F
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/fdiff.c
/petsc/src/tao/interface/fdtest.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolverregi.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F
/petsc/src/tao/leastsquares/examples/tutorials/makefile
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1.out
/petsc/src/tao/leastsquares/impls/pounders/gqt.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/leastsquares/impls/poundersb/pounders_util.c
/petsc/src/tao/leastsquares/impls/poundersb/poundersb.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/armijo/armijo.h
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.h
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.h
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.h
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/matrix/adamat.c
/petsc/src/tao/pde_constrained/examples/tutorials/elliptic.c
/petsc/src/tao/pde_constrained/examples/tutorials/hyperbolic.c
/petsc/src/tao/pde_constrained/examples/tutorials/makefile
/petsc/src/tao/pde_constrained/examples/tutorials/parabolic.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/pde_constrained/impls/sqpcon/sqpcon.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/tao/unconstrained/examples/tutorials/makefile
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf2.c
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_4.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_5.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/tao/util/tao_util.c
/petsc/src/ts/interface/ts.c
fd59a86718-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DM: If the local section is not present, it will be created automatically from PetscFE structures and boundary conditions
- Added createdefaultsection() to DM


/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdmplex.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
dm.c
decb47aa18-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DM: Change DM fields to PetscFE
- Really the DM should be split into topology and function space parts, and this would go in the later. Right now I can't
do it properly without circular dependencie

DM: Change DM fields to PetscFE
- Really the DM should be split into topology and function space parts, and this would go in the later. Right now I can't
do it properly without circular dependencies.
- This is setting up for automatic creation of Sections

show more ...


/petsc/config/builder.py
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmplex.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexlabel.c
dm.c
dmi.c
/petsc/src/snes/examples/tutorials/output/ex12_31.out
/petsc/src/snes/examples/tutorials/output/ex12_32.out
/petsc/src/snes/examples/tutorials/output/ex12_36.out
/petsc/src/snes/impls/fas/fas.c
/petsc/src/sys/objects/inherit.c
62d839e918-Feb-2014 Jed Brown <jed@jedbrown.org>

DMClearGlobalVectors: fix reference-counting loop

Reported-by: Patrick Farrell <patrick.farrell@maths.ox.ac.uk>


/petsc/bin/maint/toclapack.sh
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/package.py
/petsc/config/PETSc/packages/Chaco.py
/petsc/config/PETSc/packages/elemental.py
/petsc/config/examples/arch-cray-xt6-pkgs-opt.py
/petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-freebsd-pkgs-opt.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-linux-pkgs-opt-threadcomm.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-linux-pkgs-threadcomm.py
/petsc/config/examples/arch-linux-pkgs-valgrind.py
/petsc/config/examples/arch-osx-10.6-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
/petsc/gmakefile
/petsc/include/finclude/petscsys.h
/petsc/include/petsc-private/fortranimpl.h
/petsc/include/petscmath.h
/petsc/include/petscsys.h
/petsc/include/petscviewer.h
/petsc/src/dm/dt/examples/tests/output/ex1_1.out
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tutorials/makefile
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexvtu.c
/petsc/src/dm/impls/shell/dmshell.c
dmget.c
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex20.c
/petsc/src/ksp/ksp/examples/tests/ex42.c
/petsc/src/ksp/ksp/examples/tests/output/ex42.out
/petsc/src/ksp/ksp/examples/tests/output/ex42_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex8g.c
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/mat/examples/tests/ex15.c
/petsc/src/mat/examples/tutorials/ex9.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/mffd/mffdimpl.h
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/spectral.c
/petsc/src/snes/examples/tests/ex7.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/examples/tutorials/output/ex19_composite_gs_newton.out
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/fsrc/somefort.F
/petsc/src/sys/ftn-custom/zsys.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
/petsc/src/sys/objects/ptype.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/complementarity/examples/tutorials/blackscholes.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex6.c
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex8.c
/petsc/src/vec/is/sf/examples/tutorials/ex1.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/vec/examples/tutorials/ex1.c
/petsc/src/vec/vec/examples/tutorials/ex18.c
/petsc/src/vec/vec/examples/tutorials/ex6.c
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vecmpitoseq.c
f490541a14-Feb-2014 Peter Brune <brune@mcs.anl.gov>

DM: Fix for recursive DMDestroy() causing valgrind issues

runex26_2 in src/ts/examples/tutorials caused the following valgrind output:

> ==21447== Invalid read of size 8
> ==21447== at 0x599093E

DM: Fix for recursive DMDestroy() causing valgrind issues

runex26_2 in src/ts/examples/tutorials caused the following valgrind output:

> ==21447== Invalid read of size 8
> ==21447== at 0x599093E: DMDestroy (dm.c:401)
> ==21447== by 0x4F3F83F: PetscObjectDereference (inherit.c:612)
> ==21447== by 0x4F30C6A: PetscObjectListDestroy (olist.c:160)
> ==21447== by 0x4F3AA1F: PetscHeaderDestroy_Private (inherit.c:117)
> ==21447== by 0x5184D16: VecDestroy (vector.c:499)
> ==21447== by 0x5990EA5: DMDestroy (dm.c:425)
> ==21447== by 0x5B2833D: PCDestroy (precon.c:122)
> ==21447== by 0x5C0D6EF: KSPDestroy (itfunc.c:772)
> ==21447== by 0x5C93387: SNESDestroy (snes.c:2790)
> ==21447== by 0x5D35130: SNESReset_NASM (nasm.c:46)
> ==21447== by 0x5C92705: SNESReset (snes.c:2732)
> ==21447== by 0x5C92689: SNESReset (snes.c:2728)
> ==21447== by 0x5DA00E8: TSReset (ts.c:1872)
> ==21447== by 0x5DA09EB: TSDestroy (ts.c:1912)
> ==21447== by 0x402671: main (ex26.c:172)
> ==21447== Address 0x9b39778 is 24 bytes inside a block of size 32 free'd
> ==21447== at 0x4C2A82E: free (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
> ==21447== by 0x4F85AEB: PetscFreeAlign (mal.c:70)
> ==21447== by 0x5990F29: DMDestroy (dm.c:426)
> ==21447== by 0x5B2833D: PCDestroy (precon.c:122)
> ==21447== by 0x5C0D6EF: KSPDestroy (itfunc.c:772)
> ==21447== by 0x5C93387: SNESDestroy (snes.c:2790)
> ==21447== by 0x5D35130: SNESReset_NASM (nasm.c:46)
> ==21447== by 0x5C92705: SNESReset (snes.c:2732)
> ==21447== by 0x5C92689: SNESReset (snes.c:2728)
> ==21447== by 0x5DA00E8: TSReset (ts.c:1872)
> ==21447== by 0x5DA09EB: TSDestroy (ts.c:1912)
> ==21447== by 0x402671: main (ex26.c:172)

This was caused by recursive calls to DMDestroy(). When freeing the named local vector list, the linked list is freed
before being set to NULL. The recursive call of DMDestroy() by VecDestroy() then tries to access the value in the
structure. The fix to this is to zero out the DM member before the recursive call instead of after it.

Reported-by: Barry Smith <bsmith@mcs.anl.gov>

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/petsc/bin/pythonscripts/PetscBinaryIO.py
/petsc/bin/pythonscripts/petsc_conf.py
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/Chaco.py
/petsc/config/configure.py
/petsc/include/finclude/petscmat.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/makefile
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plexvtk.c
dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_nns.out
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/mat/utils/getcolv.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/sys/classes/bag/makefile
/petsc/src/sys/classes/viewer/impls/draw/vdraw.h
/petsc/src/sys/classes/viewer/impls/socket/matlab/sopen.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/examples/tests/ex13.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex13_1.out
/petsc/src/sys/fileio/fpath.c
/petsc/src/sys/fileio/ghome.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/fuser.c
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/output/ex26_4.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/utils/vecmpitoseq.c

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