Merge branch 'barry/2023-12-21/rm-unneeded-mansec' into 'main'

Remove MANSEC from makefiles it is not needed in, tutorials and tests

See merge request petsc/petsc!7137

Remove MANSEC from makefiles it is not needed in, tutorials and tests

Merge branch 'barry/2023-03-17/rm-unneeded-test-from-makefiles' into 'main'

simplify/cleanup makefile system

See merge request petsc/petsc!6201

Remove need for seperate lib/petsc/conf/test file by merging with rules file

Commit-type: maintainability

Merge branch 'barry/2023-02-22/rm-locdir' into 'main'

Remove need for hardwired LOCDIR in all makefiles

See merge request petsc/petsc!6113

Remove unneeded declarations of LOCDIR from all the makefiles

Commit-type:documentation

Merge branch 'barry/2022-05-03/cleanup-makefiles' into 'main'

remove unneeded stuff from makefiles

See merge request petsc/petsc!5211

Get values of makefile SOURCE etc from the file system instead of makefiles

Use SUBMANSEC from include files for manual sections instead of the makefile

Unfortunately this has to be one large commi

Get values of makefile SOURCE etc from the file system instead of makefiles

Use SUBMANSEC from include files for manual sections instead of the makefile

Unfortunately this has to be one large commit since the changes all have to be done at once

Commit-type: docs
/spend 10m

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remove garbage from makefiles

Including
* unused FLAGS variables
* All: lib that did not work
* stray blank lines etc

Commit-type: housekeeping
/spend 1h

Merge branch 'barry/2021-07-03/demonstrate-network-parallel-build' into 'main'

dmnetwork: bug fix for parallel input single subnetwork; API change, optimize and cleanup

See merge request petsc/pets

Merge branch 'barry/2021-07-03/demonstrate-network-parallel-build' into 'main'

dmnetwork: bug fix for parallel input single subnetwork; API change, optimize and cleanup

See merge request petsc/petsc!4176

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This example seems to demonstrate that one cannot construct a DMNetwork with one subnetwork in parallel correctly.

Commit-type: bug-report
\spend 40m

DMNetworkAddSubnetwork() does not need input nv

This example seems to demonstrate that one cannot construct a DMNetwork with one subnetwork in parallel correctly.

Commit-type: bug-report
\spend 40m

DMNetworkAddSubnetwork() does not need input nv; optimize DMNetworkLayoutSetUp_Coupling() and DMNetworkLayoutSetUp()
bugfix for DMNetworkDistribute(): subnet[].nvtx was over counted
cleanup network.c; add '-malloc_dump 0' to ex10.c: otherwise opensolaris-misc pipeline test fails
use the fix suggested by Satish. This fixes the opensolaris-misc pipeline test error of ex10.c, and harmless to other cases
rm #if 0. Previously kept for future work

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Merge branch 'sajid/bugfix-patchis' into 'master'

DMDACreatePatchIS : change to collective operation

Closes #744

See merge request petsc/petsc!3304

DMDACreatePatchIS : change to collective operation and add test

Merge remote-tracking branch 'origin/maint'

Merge remote-tracking branch 'origin/jolivet/fix-symlink-free' into maint

Single petscdir.mk

Merge branch 'barry/2020-03-17/add-gnumakefile' into 'master'

Provide support for not setting PETSC_DIR when gnumake is being used; this...

See merge request petsc/petsc!2604

Provide support for not setting PETSC_DIR when gnumake is being used; this will prevent some petsc-maint/petsc-users email threads

Commit-type: error-checking, testing-fix, feature, example
Thanks-t

Provide support for not setting PETSC_DIR when gnumake is being used; this will prevent some petsc-maint/petsc-users email threads

Commit-type: error-checking, testing-fix, feature, example
Thanks-to: Jed Brown <jed@jedbrown.org>
Thanks-to: Lisandro Dalcin <dalcinl@gmail.com>

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Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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