Merge branch 'cuda' into 'main'

Fix CUDA 13 API incompatibilities

See merge request petsc/petsc!8632

Gather CUDA lib includes in petscdevice_cuda.h + disable cuSPARSE warnings using DISABLE_CUSPARSE_DEPRECATED

Defining DISABLE_CUSPARSE_DEPRECATED is Nvidia's recommended way of disabling cuSPARSE wa

Gather CUDA lib includes in petscdevice_cuda.h + disable cuSPARSE warnings using DISABLE_CUSPARSE_DEPRECATED

Defining DISABLE_CUSPARSE_DEPRECATED is Nvidia's recommended way of disabling cuSPARSE warnings
This avoids requiring -Wdeprecated-declarations - that can mask other (non-cuSPARSE) warnings

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Merge branch 'jacobf/2023-08-17/header-guard-check' into 'main'

Check header guards

See merge request petsc/petsc!6822

Convert all header guards to pragma once

Merge branch 'jczhang/feature-matdup-coo' into 'main'

Duplicate COO info in MatDuplicate(), but use reference counting to save memory

See merge request petsc/petsc!6459

Mat: duplicate COO info in MatDuplicate, but do reference counting to save memory

Thanks to Maxime Bouyges <maxime.bouyges@gmail.com> for feature requests.

Merge branch 'adams/mat-remove-matsetvaluesdevice' into 'main'

remove MatSetValuesDevice

See merge request petsc/petsc!6378

remove MatSetValuesDevice

Merge branch 'jacobf/2022-09-23/veccupm' into 'main'

Feature: CUPM Vec

See merge request petsc/petsc!5685

Vec CUPM implementation to replace old CUDA and HIP versions

Merge branch 'jacobf/2022-09-26/if-not-defined-to-ifndef' into 'main'

If!defined() -> ifndef

See merge request petsc/petsc!5686

Change the remaining if !defined() header guards that were missed during The Great Formatting 2 to ifndef

Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'jczhang/revise-mat-coo' into 'main'

Use different algorithms for local and remote COO entries

See merge request petsc/petsc!5113

MATAIJ: use different algorithms for local and remote COO entries

Merge branch 'jczhang/fix-mpiaijcusparse-handle-stream' into 'main'

Mat_MPIAIJCUSPARSE does not need to have its own stream or cuSparse handle

See merge request petsc/petsc!5020

Mat: Mat_MPIAIJCUSPARSE does not need to have its own cuSparse handle or cuda stream

As Mat_SeqAIJCUSPARSE already has them. Otherwise, if we create a cuSparse handle in Mat_MPIAIJCUSPARSE,
and set

Mat: Mat_MPIAIJCUSPARSE does not need to have its own cuSparse handle or cuda stream

As Mat_SeqAIJCUSPARSE already has them. Otherwise, if we create a cuSparse handle in Mat_MPIAIJCUSPARSE,
and set it as diagonal A and offdiagonal B's handle, then in MatDestroy_SeqAIJCUSPARSE(), we may destroy
the same handle twice: one for for A, the other for B.

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Merge branch 'jczhang/feature-improve-mataij-coo' into 'main'

Do COO preallocation on MATAIJ and share the plan with other device matrix types

See merge request petsc/petsc!4831

Mat: support extended COO with mataijcusparse

Merge branch 'jczhang/feature-add-comments-matproduct' into 'main'

Mat/SF: add some comments to code

See merge request petsc/petsc!4231

MAT/SF: add some comments to code

Merge branch 'barry/2020-11-11/cleanup-matsetvaluesdevice' into 'main'

MatSetValuesDevice: Cleanup and simplify code, including example

See merge request petsc/petsc!3411