Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners

See merge request petsc/petsc!5557

Remove braces from one-liners

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'barry/2022-07-23/add-petscbeginuser' into 'main'

Add PetscFunctionBeginUser to all PETSc C/C++ examples

See merge request petsc/petsc!5470

Add PetscFunctionBeginUser to all PETSc C/C++ examples

Now the stack frames will contain the main program and the correct line numbers in them

git ls-files | egrep "(tutorials|tests)" | xargs sed -

Add PetscFunctionBeginUser to all PETSc C/C++ examples

Now the stack frames will contain the main program and the correct line numbers in them

git ls-files | egrep "(tutorials|tests)" | xargs sed -i "s?\(PetscCall(PetscInitialize(&argc\)?PetscFunctionBeginUser;\n \1?g"

Commit-type: error-checking, testing-fix
/spend 15m

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Merge branch 'barry/2022-03-22/rm-petsccheckfalse-mpi-size' into 'main'

Remove use of PetscCheckFalse() on a subset of examples

See merge request petsc/petsc!5006

Remove all use of PetscCheckFalse() for MPI size on a subset of examples

Commit-type: error-checking, housekeeping
/spend 35m

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+

PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+ return 0;

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chkerr and friends wrapped

Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()

add PetscAssert() and PetscAssertFalse()

Merge branch 'barry/2020-10-08/fix-mpi-error-codes' into 'master'

Convert MPI error type to PETSc error with string message for all MPI calls

See merge request petsc/petsc!3326

Convert MPI error type to PETSc error with string message for all MPI calls

Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-pro

Convert MPI error type to PETSc error with string message for all MPI calls

Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-process their
errors better.

The test harness will now automatically retry tests that fail with MPI, this may help with Intel MPI that produces
seemingly random failures.

Commit-type: error-checking
/spend 30m

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Merge remote-tracking branch 'origin/maint'

Merge branch 'wence/fix/matnest-submat-blocksize' into 'maint'

MATNEST: correctly handle block sizes when rbs != cbs

See merge request petsc/petsc!2883

MATNEST: correctly handle block sizes when rbs != cbs

When looking up, and creating, LGMaps and ISes for the columns, we
need to use the column block size, rather than assuming it's equal to
the row

MATNEST: correctly handle block sizes when rbs != cbs

When looking up, and creating, LGMaps and ISes for the columns, we
need to use the column block size, rather than assuming it's equal to
the row block size.

Make this explicit everywhere by using MatGetBlockSizes, rather than
MatGetBlockSize for the row case.

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