removed path argument to XXXInitializePackage() and XXXRegister()

removed XXXRegisterDynamic() but kept the APIs for everything else underneath the same
phase I of the update to handling registering function pointers

Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into A

Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into AMS.py for AMS javascript and AMSSnoopObjects.py for example showing published objects
fix bug in previous commit
added error returns for JSON-RPC AMS calls
don't let web accessor change length of array setting to publisher
Pass arrays of values back from webserver to AMS publisher
fix for last commit, missing errorcode and wrong variable name
KSPLogResidualHistory and SNESLogConvergenceHistory need to lock for AMS and have error checking when called
shutdown webserver if you started it on PetscFinalize(), what about when crash, should still shut it down
Added support for starting server automatically by application code messed around finding a bug in AMS
got value back from webclient to application
goddman script Jed sent me doesn;t work, it loses changes
split webserver into standalone problem that is not part of running PETSc application had to do this since impossible for AMS publisher and accessor to be in same application better to just totally redo AMS! But that is to large a project
moved webserver code to its own directory and file
added callback for changable fields in pyjs representation of AMS memories
add AMS viewer for PC, server can only run without any memory debugging
changed AMS publishing to use the Viewer model added simple AMS viewer for mat,ksp,snes,ts added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS) added PetscStackCalls around AMS function calls when appropriate (note do not want these in webserver because do not webserver stopping just because AMS server is down
more work on moving AMS model to viewer
Fix for SNESSetConvergenceHistory() when input a is null
...

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Merge branch 'master' into barry/ams

Conflicts:
include/petscviewer.h
src/sys/classes/viewer/interface/viewreg.c
src/sys/threadcomm/interface/threadcomm.c

Merge branch 'master' of bitbucket.org:petsc/petsc into knepley/plex

Merge branch 'master' into jed/ts-eimex

Sync to include Git conversion, PETSC_EXTERN, and minor API changes.

Conflicts:
src/ts/interface/tsregall.c

Merge branch 'balay/nightlybuild-fixes'

doc: nightlybuild fixes

changed AMS publishing to use the Viewer model
added simple AMS viewer for mat,ksp,snes,ts
added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS)
added PetscS

changed AMS publishing to use the Viewer model
added simple AMS viewer for mat,ksp,snes,ts
added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS)
added PetscStackCalls around AMS function calls when appropriate (note do not want these in webserver because do not webserver stopping just because AMS server is down

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Merge branch 'barry/convergence-history' into barry/ams

more work on moving AMS model to viewer

Fix for SNESSetConvergenceHistory() when input a is null

fixed calls to PetscObjectAMSTake/GrantAccess() to cast first argument to PetscObject

work on AMS interface, consistent naming, ams.h not included in petscviewer.h, no ifdefs

Hg-commit: 642571a1dc7109fdb7e5b0abb23bf260d10eb970

added KSPSetPreSolve() and KSPSetPostSolve() and removing SNES_KSPSolve() having the Eisenstat-Walker code use the SetPre and Post

Hg-commit: e42d7b26aaba7877248896e0fb4089fe619da155

more work on AMS JSON-RPC Web interface

Hg-commit: 610511a68dcbe0d01c88ee4f8cc7926484939c33

damn it, I did it again, you get old, you get forgetfull

Hg-commit: 8f34ae19ad2181d2ca2deeb714bad0feab722c32

AMS JSON-RPC can now pass arrays back to Javascript

Hg-commit: 1b37cd60ffda8bb3755881b9fc557bca2cfd83eb

PetscWebServe() should not have fortran stub, try publishing array of double

Hg-commit: 14049482a934289bd97f09ec39b639b5b6b4a0ce

bug fix for PetscWebServeRequestPostAMSJSONRPC(), I total misunderstood the header structure, it's amazing it ever worked.

Hg-commit: f84398a9aa223390b75f128cb3580f8074a47bcc

updated docs and source for SNEGetJacobian(), SNESGetPicard(), TSGetRHSJacobian() and TSGetIJacobian() to use same wording and variable names for Amat and Pmat as the XXXSetYYY routines

Hg-commit: e

updated docs and source for SNEGetJacobian(), SNESGetPicard(), TSGetRHSJacobian() and TSGetIJacobian() to use same wording and variable names for Amat and Pmat as the XXXSetYYY routines

Hg-commit: ea0d114bd48753401ceab147ff7e87c8212f0049

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consistent variable names and wording for operators to PCSetOperators(), PCGetOperators(), KSPSetOperators(), SNESSetJacobian(), SNESSetPicard(), TSSetRHSJacobian() and TSSetIJacobian() still need t

consistent variable names and wording for operators to PCSetOperators(), PCGetOperators(), KSPSetOperators(), SNESSetJacobian(), SNESSetPicard(), TSSetRHSJacobian() and TSSetIJacobian() still need to do the Get versions and the users manual

Hg-commit: 774f9fd7b29cb84e28b8af455343ed4f6bdaa9b0

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fixed function names with Default to match new standard (which I just wrote)
fixed a few more functions that should be PETSC_INTERN

Hg-commit: 87889fe4f6d4e8d0963adcc79d438e75330601c6

Automerge.

Hg-commit: 81500f7e84c8ec0c4dcae9cb31d1cb32892d545d

simplified design of VecValidValues() not worth the complications to save a function call

Hg-commit: 234f2a55d16ddb81bfaf0672e62560aad670b624