Merge branch 'jolivet/housekeeping' into 'main'

Minor housekeeping

See merge request petsc/petsc!8897

Fix missing equal sign

Proper capitalization from Gram-Schmidt orthogonalization

Merge branch 'barry/2025-11-04/kspview-clearer-amat-pmat' into 'main'

Fix terminology for Pmat in KSPView output.

See merge request petsc/petsc!8826

Fix terminology for Pmat in KSPView output.

Merge branch 'sneslinesearch-improvements' into 'main'

SNESLinesearch: Minor improvements

See merge request petsc/petsc!8630

SNESLinesearch: Minor improvements

- add missing configuration options in the documentation of the line searches (some of the available options were not listed), and consistently list their respecti

SNESLinesearch: Minor improvements

- add missing configuration options in the documentation of the line searches (some of the available options were not listed), and consistently list their respective default values

- add proper convergence criteria for the secant method in the L2 line search based on ltol and atol (otherwise, the secant method is mostly running for the maximum number of iterations)

- fix a small bug in the CP line search, where steptol * lambda was used to check for convergence based on the change of lambda instead of the ltol parameter

- rename sneslinesearch->maxstep to sneslinesearch->maxlambda in the options database to be consistent with its purpose in the algorithms

- rename SNESLineSearchL2 to SNESLineSearchSecant to better represent its underlying approach

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Merge branch 'barry/2024-06-15/deprecate-petsc-current' into 'main'

Deprecate the use of PETSC_DEFAULT with PETSC_CURRENT since PETSC_DEFAULT is a...

See merge request petsc/petsc!7634

Update SNESSetTolerances() to accept PETSC_DETERMINE an PETSC_DECIDE

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

Remove trailing whitespace

Fix double whitespace after colon

Merge branch 'stefanozampini/swap-monitor-convergence' into 'main'

Swap monitor/convergence test in SNES

See merge request petsc/petsc!6492

SNES: move monitor after convergence test

Use a developer level convergence function and fix a few corner cases

Merge branch 'knepley/feature-tetgen-labels' into 'master'

DM: Added universal label

See merge request petsc/petsc!3402

DM: Added universal label - A universal label encodes the markers for a set of labels - We need this when using systems like TetGen that only take a single label - Added tests in Plex ex11

Merge branch 'maint'

Merge remote-tracking branch 'origin/balay/add_test_alt/maint' into maint

Balay/add test alt/maint

See merge request petsc/petsc!2666

ci: update alt files for osx

- src/snes/tutorials/output/ex12_44.out likely incorrectly updated in c4762a1b19cd2af06abeed90e8f9d34fb975dd94
- src/ts/tutorials/output/ex12_2_alt.out added for one of

ci: update alt files for osx

- src/snes/tutorials/output/ex12_44.out likely incorrectly updated in c4762a1b19cd2af06abeed90e8f9d34fb975dd94
- src/ts/tutorials/output/ex12_2_alt.out added for one of the 3 OSX boxes (jpro) - producing slightly different numbers

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Merge branch 'knepley/feature-dm-remove-hybrid' into 'master'

Knepley/feature dm remove hybrid

See merge request petsc/petsc!2614

DM+Plex: Example Fixes for cell type rewrite

Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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