MATIS: allow repeated entries

deprecate old matis_ options, the correct way is mat_is_...
fix nonzerostate

add multielement code path in ex71

Plex ex53: Cleaned up creation and addded parallel test

DMPlex: update test outputs

Remove some unneeded parentheses

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefan

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefano Zampini

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Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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Remove trailing whitespace

Fix double whitespace after colon

checkbadSource: rules for PetscFunctionBegin and derivatives

Merge remote-tracking branch 'origin/release'

Merge branch 'knepley/fix-plex-io-section-perm' into 'main'

Plex: Flexible creation of section permutations

See merge request petsc/petsc!7258

Plex: Improved debugging

Update makefile to build ex55
Thanks to Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/bddc-mixed-poisson' into 'main'

SNES ex24: add BDDC tests

See merge request petsc/petsc!7121

KSP: fix eigenvalues computations

update outputs

Change the use of the _Fn suffix to indicate a typedef of a function to just Fn

As determined on a vote on GitLab

Update `PetscSimplePointFunc` to new naming convention `PetscSimplePoint_Fn`

Commit-type: housekeeping

add typedef for functions passed to SNESSetFunction() etc to match approach in TS

I never liked Jed's use of typedef for function prototypes for a couple of reasons

1) you don't see immediately tha

add typedef for functions passed to SNESSetFunction() etc to match approach in TS

I never liked Jed's use of typedef for function prototypes for a couple of reasons

1) you don't see immediately that the argument to the function is a function pointer instead of standard variable when looking at source
2) you don't see at the exact location in the code the prototype of the function being passed in

but there is something to say for using these typedefs so

I've prototyped the change for SNES but slightly differently than what Jed did for TS

1) I append the typedef with _Ftn to mark that it is a function (helping to relieve the problem 1 above)
2) I made the typedef to be for a function, not a function pointer so it can also be used directly for things like

PETSC_EXTERN SNESJacobian_Ftn SNESComputeJacobianDefault;

I think the TS usage could be switched to this style without user code breakage, and deprecate the current TS typedef

Thoughts?

Just do SNES the same way as TS and live with less clarity?

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MAT[HERMITIAN]NORMAL as a MATSHELL

DMCreateDomainDecomposition: support sequential cases

SNES ex11: simplified SNES + PLEX example

PCBDDC: support DMFOREST

add more corners to prevent from floating subdomains

SNES ex25: tweak CI output