Rework PetscDeviceContext backends and supporting code:
- Add PETSC_DEVICE_HOST
- Add PetscDeviceAllocate()
- Add PetscDeviceMalloc()
- Add PetscDeviceDeallocate()
- Add PetscDeviceFree()
- Add Petsc

Rework PetscDeviceContext backends and supporting code:
- Add PETSC_DEVICE_HOST
- Add PetscDeviceAllocate()
- Add PetscDeviceMalloc()
- Add PetscDeviceDeallocate()
- Add PetscDeviceFree()
- Add PetscDeviceMemcopy()
- Add PetscDeviceArraycopy()

- Split petscdevice.h into petscdevice_cuda.h and petscdevice_hip.h
- Add petscdevice_cupm.h
- Extend cupm::Interface and cupm::BlasInterface classes
- Add more C++ utility wrappers

show more ...

Merge branch 'barry/2022-08-23/fix-sys-man' into 'main'

Fix up all manual pages in src/sys directory

See merge request petsc/petsc!5559

Fix up all manual pages in src/sys directory

Commit-type: documentation
/spend 10h

Merge branch 'barry/2022-08-28/fix-petscfunctionreturn-nonzero' into 'main'

Remove incorrect use of PetscFunctionReturn(nonzero integer value). Add this...

See merge request petsc/petsc!5564

Remove incorrect use of PetscFunctionReturn(nonzero integer value). Add this rule to the developers guide

Commit-type: house-keeping
/spend 1h
Reported-by: Pierre Jolivet

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners w/o PetscCall()

See merge request petsc/petsc!5561

Remove braces from one-liners w/o PetscCall()

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners

See merge request petsc/petsc!5557

Remove braces from one-liners

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'barry/2022-06-24/linenumbers-petscstack' into 'main'

Fixes/improvements for PETSc stack handling

See merge request petsc/petsc!5368

Add PETSc CI mode to allow better handling of errors and system dependent output when running in test harness

-petsc_ci - automatically set for all runs in test harness

-petsc_ci_portable_error_out

Add PETSc CI mode to allow better handling of errors and system dependent output when running in test harness

-petsc_ci - automatically set for all runs in test harness

-petsc_ci_portable_error_output - ensures all error messages (when possible are system and compiler information),
should be only used in tests that are explicitly testing the error handling

This allows proper comparisons of runs on different machines and when errors are intentionally triggered to test error handling

Commit-type: error-checking, testing-fix
/spend 5h

show more ...

Merge branch 'barry/2022-06-03/add-mpi-kspsolve-nonmpi-program' into 'main'

Add -mpi_linear_solver_server

See merge request petsc/petsc!5318

The malloc checker printed the PETSc stack trace, but when a signal is caught the trace is already printed.


Commit-type: error-checking, bug-fix
/spend 10m

Merge branch 'barry/2022-05-01/fix-petsccall-fortran' into 'main'

Add proper support for PetscCall(), PetscCallMPI() for Fortran

See merge request petsc/petsc!5196

Add proper support for PetscCall(), PetscCallMPI() for Fortran

Also add support for PetscCallA(), PetscCallMPIA() for Fortran that abort

Provide support for printing the Fortran line and filenames

Add proper support for PetscCall(), PetscCallMPI() for Fortran

Also add support for PetscCallA(), PetscCallMPIA() for Fortran that abort

Provide support for printing the Fortran line and filenames with the errors or not depending on how long Fortran source code lines can be

Minor improvements to handling calls to PetscError() with no function string

Commit-type: error-checking, feature
/spend 2h

show more ...

Improve formatting of MPI error messages printed by PETSc error handlers.

Commit-type: feature, error handling
/spend 15m

Merge branch 'psanan/docs-sphinx-man-pages' into 'main'

Integrate Man Pages into Sphinx Docs

Closes #1132 and #1015

See merge request petsc/petsc!4989

Merge branch 'jolivet/housekeeping' into 'main'

General housekeeping

See merge request petsc/petsc!5192

Do not print empty lines in error message

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (wor

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (word.rstrip(","), comma)

def _process_stripped_line(line):
return " ".join(map(_process_word, line.split()))

start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")

def process_file(filename_full):
with fileinput.FileInput(filename_full, inplace=True) as f:
in_block = False
for line in f:
line_stripped = line.strip()
# end ".seealso blocks" on a blank line or C-style comment close
line_modified = None
if not line_stripped:
in_block = False
elif line_stripped.endswith("*/"):
in_block = False
else:
match = re.match(start_pattern,
line) # not stripped line
if match:
indent = " " * len(match.group(1))
in_block = True
line_modified = match.group(
1) + _process_stripped_line(
match.group(2).strip())
elif in_block:
line_modified = indent + _process_stripped_line(
line_stripped)
if line_modified:
print(line_modified) # prints to the file
else:
print(line, end="") # prints to the file

BASE_DIRS = ["src", "include"]
EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]
EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]

def main():
""" Process everything """
for base in BASE_DIRS:
for root, dirs, files in os.walk(base):
for filename in files:
if os.path.splitext(filename)[1] in EXT:
filename_full = os.path.join(root, filename)
print("FILE ---", filename_full)
process_file(filename_full)
for exclude_dir in EXCLUDE_DIRS:
if exclude_dir in dirs:
dirs.remove(exclude_dir)

if __name__ == "__main__":
main()
```

show more ...

Merge branch 'jolivet/feature-alen' into 'main'

Add PETSC_STATIC_ARRAY_LENGTH

See merge request petsc/petsc!5055

Add PETSC_STATIC_ARRAY_LENGTH

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889