updated to latest SAWs API

updated to new /dir1/dir2/variablename scheme for SAWs

updated PETSc to use a hierarchy of SAWs directories, doesn't work properly

update for latest SAWs

Merge remote-tracking branch 'origin/master' into stefano_zampini/pcbddc-constraintssetupimproved

converted uAMS usage to SAWs usage; starts server but cannot see any published directories

updates to AMS interface include simple bash scripts

Merge branch 'maint'

* maint:
doc: add petsctime.h to SOURCEH (fixes missing docs)
Increase patchlevel to 3.4.2
ABI compatibility for debug and optimized builds

Merge branch 'dalcinl/libpetsc-abi' into maint

updated to new version of AMS; not tested

ABI compatibility for debug and optimized builds

Merge branch 'master' of bitbucket.org:petsc/petsc

Merged petsc/petsc into rmills/petsc master

Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which

Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.

* barry/rm-xxxregisterdynamic: (82 commits)
...

Conflicts:
src/ts/interface/tsregall.c

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Merge branch 'barry/ams'

* barry/ams:
PetscStackAMS: define dummy stubs for AMS stack viewing in optimized builds

PetscStackAMS: define dummy stubs for AMS stack viewing in optimized builds

These are not called in performance-sensitive locations and we might add
support for using libunwind to get a stack for AM

PetscStackAMS: define dummy stubs for AMS stack viewing in optimized builds

These are not called in performance-sensitive locations and we might add
support for using libunwind to get a stack for AMS viewing purposes, so
I'd rather have stubs in pstack.c than use macros in the header to
compile out the calls.

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Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into A

Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into AMS.py for AMS javascript and AMSSnoopObjects.py for example showing published objects
fix bug in previous commit
added error returns for JSON-RPC AMS calls
don't let web accessor change length of array setting to publisher
Pass arrays of values back from webserver to AMS publisher
fix for last commit, missing errorcode and wrong variable name
KSPLogResidualHistory and SNESLogConvergenceHistory need to lock for AMS and have error checking when called
shutdown webserver if you started it on PetscFinalize(), what about when crash, should still shut it down
Added support for starting server automatically by application code messed around finding a bug in AMS
got value back from webclient to application
goddman script Jed sent me doesn;t work, it loses changes
split webserver into standalone problem that is not part of running PETSc application had to do this since impossible for AMS publisher and accessor to be in same application better to just totally redo AMS! But that is to large a project
moved webserver code to its own directory and file
added callback for changable fields in pyjs representation of AMS memories
add AMS viewer for PC, server can only run without any memory debugging
changed AMS publishing to use the Viewer model added simple AMS viewer for mat,ksp,snes,ts added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS) added PetscStackCalls around AMS function calls when appropriate (note do not want these in webserver because do not webserver stopping just because AMS server is down
more work on moving AMS model to viewer
Fix for SNESSetConvergenceHistory() when input a is null
...

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basic snooping on PetscStack is now working

Merge branch 'master' into jed/ts-eimex

Sync to include Git conversion, PETSC_EXTERN, and minor API changes.

Conflicts:
src/ts/interface/tsregall.c

Stack frames are used in debug-mode only.

Hg-commit: 304011531f35c1c864485caf6bb2a40c82719a51

i) Created a global thread communicator to manage all the threads.
ii) Seperate creation and destroying of stack frames for threads.

Hg-commit: 8e5ea17f351d46ba0bdba3b58ff2938526d8a840

fixed bug that appears in C++ with casting to void** in pthread stuff

Hg-commit: dee2854f44eddfeec83028aca913288bcf35b3cb

more docs on PetscStackCall() and PetscStackCallStandard()
PetscStackActive becomes function

Hg-commit: f0602b91e50ee4dcd2925041a27b0a3f025d08b6

removed last macro function from thread local infrastructure

Hg-commit: 85f62b889edeaa2041e78728f8f3290022e5c6b8

Uncrustified src/sys/*

Hg-commit: 9f71677807bad7b55428a6cc0f5ccc5052e91805