Merge branch 'jolivet/rm-first-empty-line' into 'main'

Remove first and last empty lines

See merge request petsc/petsc!6892

Remove first and last empty lines

Merge branch 'jacobf/2023-06-30/enable-doc-lint' into 'main'

Enable docs linting

See merge request petsc/petsc!6667

Lint apply: sys

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-04-26/fix-fileio-man-pages/release' into 'release'

Cleanup of manual pages in src/sys/fileio

See merge request petsc/petsc!6381

Cleanup of manual pages in src/sys/fileio

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-03-30/fix-man-pages/release' into 'release'

Fix some manual pages

See merge request petsc/petsc!6265

Fix some manual pages

Commit-type: documentation

Branch-name: barry/2023-03-30/fix-man-pages/release
Branch-root: release
Branch-purpose: Fix some manual page formatting

Merge branch 'balay/ci-migrate-2' into 'main'

CI: migrate to Ubuntu-22.04 (part-2):

See merge request petsc/petsc!6124

CI: migrate to Ubuntu-22.04 (part-2):

- linux-sycl-double
- linux-cxx-cmplx-pkgs-64idx-gcov
- arch-ci-linux-pkgs-gcov
- arch-ci-linux-matlab-ilp64-gcov: Fix warnings of type: /scratch/svcpetsc/petsc

CI: migrate to Ubuntu-22.04 (part-2):

- linux-sycl-double
- linux-cxx-cmplx-pkgs-64idx-gcov
- arch-ci-linux-pkgs-gcov
- arch-ci-linux-matlab-ilp64-gcov: Fix warnings of type: /scratch/svcpetsc/petsc.y/src/sys/utils/str.c:612:10: error: 'epar' may be used uninitialized in this function [-Werror=maybe-uninitialized]
src/mat/tests/ex237.c
src/sys/dll/dl.c
src/sys/fileio/rpath.c
src/sys/utils/str.c
- arch-ci-linux-pgi
- arch-ci-linux-nagfor: migrate to u20 [as u22 gives build errors with MPICH?]
- arch-ci-linux-intel-cmplx: workaround build failures of chaco, scalapack, hypre, bamg
- arch-ci-linux-intel: Fix: /scratch/svcpetsc/petsc.x/src/ts/tests/ex30.c:404:13: error: ignoring return value of function declared with 'warn_unused_result' attribute [-Werror,-Wunused-result]
src/ts/tests/ex30.c
- linux-gcc-ifc-cmplx
- gce-nfs-short -> gce-u22-short

show more ...

Merge branch 'jacobf/2022-12-10/petscerrorcode-nodiscard' into 'main'

Feature: Non-discardable PetscErrorCode

See merge request petsc/petsc!5923

Make PetscErrorCode a non-discardable enum

Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'psanan/docs-sphinx-man-pages' into 'main'

Integrate Man Pages into Sphinx Docs

Closes #1132 and #1015

See merge request petsc/petsc!4989

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (wor

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (word.rstrip(","), comma)

def _process_stripped_line(line):
return " ".join(map(_process_word, line.split()))

start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")

def process_file(filename_full):
with fileinput.FileInput(filename_full, inplace=True) as f:
in_block = False
for line in f:
line_stripped = line.strip()
# end ".seealso blocks" on a blank line or C-style comment close
line_modified = None
if not line_stripped:
in_block = False
elif line_stripped.endswith("*/"):
in_block = False
else:
match = re.match(start_pattern,
line) # not stripped line
if match:
indent = " " * len(match.group(1))
in_block = True
line_modified = match.group(
1) + _process_stripped_line(
match.group(2).strip())
elif in_block:
line_modified = indent + _process_stripped_line(
line_stripped)
if line_modified:
print(line_modified) # prints to the file
else:
print(line, end="") # prints to the file

BASE_DIRS = ["src", "include"]
EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]
EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]

def main():
""" Process everything """
for base in BASE_DIRS:
for root, dirs, files in os.walk(base):
for filename in files:
if os.path.splitext(filename)[1] in EXT:
filename_full = os.path.join(root, filename)
print("FILE ---", filename_full)
process_file(filename_full)
for exclude_dir in EXCLUDE_DIRS:
if exclude_dir in dirs:
dirs.remove(exclude_dir)

if __name__ == "__main__":
main()
```

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Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

show more ...

chkerr and friends wrapped

Merge branch 'barry/2021-05-16/fix-double-lines' into 'main'

Fix typos in source

See merge request petsc/petsc!3984

Remove all double blank lines from source

Commit-type: petsc-style
/2h