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c0c93d0e
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib e
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
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609189e8
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| 21-Aug-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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1b17e196
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| 20-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fixmultmallocs'
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eb9baa12
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| 19-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
show more ...
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e33c197d
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| 11-Jun-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master.
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dd00b650
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| 05-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/matmatmult-sort'
New version provides in the neighborhood of 20% speedup for MatMatMult
as used in PCGAMG.
* jed/matmatmult-sort:
MatMatMultSymbolic_SeqAIJ_SeqAIJ: switch to "so
Merge branch 'jed/matmatmult-sort'
New version provides in the neighborhood of 20% speedup for MatMatMult
as used in PCGAMG.
* jed/matmatmult-sort:
MatMatMultSymbolic_SeqAIJ_SeqAIJ: switch to "sort" version as default
segbuffer: g++ does not like casting int*restrict* to void*, void** okay
MatMatMult_SeqAIJ_SeqAIJ_Sort: new implementation using char flags and sorting
segbuffer: add PetscSegBufferGetInts() to encourage use of PETSC_RESTRICT
segbuffer: create wrapper structure
segbuffer: add PetscSegBufferGetSize() and PetscSegBufferUnuse()
segbuffer: fix bug in which seg->used was not reset
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bde21c6d
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| 03-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/matmatmult-sort' into jed/fix-optionsinsertfile-large
Branch contains segbuffer enhancements in addition to
MatMatMult_SeqAIJ_SeqAIJ_Sort. I need the segbuffer enhancements, one of
Merge branch 'jed/matmatmult-sort' into jed/fix-optionsinsertfile-large
Branch contains segbuffer enhancements in addition to
MatMatMult_SeqAIJ_SeqAIJ_Sort. I need the segbuffer enhancements, one of
which is a portability fix that was applied after the
MatMatMult_SeqAIJ_SeqAIJ_Sort commit.
* jed/matmatmult-sort:
segbuffer: g++ does not like casting int*restrict* to void*, void** okay
MatMatMult_SeqAIJ_SeqAIJ_Sort: new implementation using char flags and sorting
segbuffer: add PetscSegBufferGetInts() to encourage use of PETSC_RESTRICT
segbuffer: create wrapper structure
segbuffer: add PetscSegBufferGetSize() and PetscSegBufferUnuse()
segbuffer: fix bug in which seg->used was not reset
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4d2d963c
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| 28-Mar-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master
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e1d27e54
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| 28-Mar-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.
* barry/rm-xxxregisterdynamic: (82 commits)
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Conflicts:
src/ts/interface/tsregall.c
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137cf7b6
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| 25-Mar-2013 |
Jed Brown <jed@59A2.org> |
segbuffer: create wrapper structure
The old structure exposed the linked list property of the implementation.
Now we have a simple wrapper structure so that implementation detail is
not leaked. This
segbuffer: create wrapper structure
The old structure exposed the linked list property of the implementation.
Now we have a simple wrapper structure so that implementation detail is
not leaked. This will also make it possible to implement some thread-safe
operations.
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eb4227cf
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| 20-Mar-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/ams
Conflicts:
include/petscviewer.h
src/sys/classes/viewer/interface/viewreg.c
src/sys/threadcomm/interface/threadcomm.c
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5bfe0a24
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| 19-Mar-2013 |
Matt Knepley <knepley@ci.uchicago.edu> |
Merged in jed/plex-scalable-partition-closure (pull request #11)
DMPlexCreatePartitionClosure: replace quadratic algorithm
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77b76215
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| 19-Mar-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'jed/plex-scalable-partition-closure' of bitbucket.org:petsc/petsc into knepley/plex
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47452e7b
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| 19-Mar-2013 |
Jed Brown <jed@59A2.org> |
PetscSegBuffer: add extraction to existing buffer and in-place
* PetscSegBufferExtractAlloc: allocates new memory (old behavior)
* PetscSegBufferExtractTo: use provided buffer
* PetscSegBufferExtr
PetscSegBuffer: add extraction to existing buffer and in-place
* PetscSegBufferExtractAlloc: allocates new memory (old behavior)
* PetscSegBufferExtractTo: use provided buffer
* PetscSegBufferExtractInPlace: pack into space that will be used by
next call to PetscSegBufferGet().
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0f453b92
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| 19-Mar-2013 |
Jed Brown <jed@59A2.org> |
PetscSegBuffer: make segmented buffer from PetscBuildTwoSided reusable
Segmented buffers are used to incrementally build lists without knowing
the size up-front. The addresses of insertion locations
PetscSegBuffer: make segmented buffer from PetscBuildTwoSided reusable
Segmented buffers are used to incrementally build lists without knowing
the size up-front. The addresses of insertion locations are stable,
unlike with re-allocate and copy mechanisms.
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4042b796
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| 17-Mar-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'master' into jed/ts-eimex
Sync to include Git conversion, PETSC_EXTERN, and minor API changes.
Conflicts:
src/ts/interface/tsregall.c
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a663daf8
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| 09-Feb-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
added include stddef.h to petscsys.h
removed many duplicate includes of system includes
Hg-commit: 26ea335c035572bcbd495f9993b3270632d5d3c6
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0298fd71
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| 08-Feb-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed PETSC_NULL from C and Fortran (except declaration in C for backward compatibility). Kept PETSC_NULL_xxx for Fortran
Fixed a few bugs where PETSC_NULL had been used incorrectly.
Hg-commit: 05
removed PETSC_NULL from C and Fortran (except declaration in C for backward compatibility). Kept PETSC_NULL_xxx for Fortran
Fixed a few bugs where PETSC_NULL had been used incorrectly.
Hg-commit: 054705a517d7f4388a8a084415d7478cbe95dff4
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a297a907
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| 29-Jan-2013 |
Karl Rupp <rupp@mcs.anl.gov> |
Uncrustified src/sys/*
Hg-commit: 9f71677807bad7b55428a6cc0f5ccc5052e91805
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4dc2109a
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| 27-Jan-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
changed PetscMPIIntCast() to return an error code
Hg-commit: 73696a6c6bf0120a669678ed7c25e3c7bd451960
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72ca7aa7
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| 25-Jan-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
commit after merge
Hg-commit: 0abf89d5ee6edf91e6393c34ebd34611a44a1ae3
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6145cd65
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| 25-Jan-2013 |
Jed Brown <jed@59A2.org> |
Detect MPICH ch3:sock bug and choose BuildTwoSided algorithm appropriately
Falls back to old algorithm (MPI_Allreduce) when fix not detected.
This patch includes public interfaces to query and set
Detect MPICH ch3:sock bug and choose BuildTwoSided algorithm appropriately
Falls back to old algorithm (MPI_Allreduce) when fix not detected.
This patch includes public interfaces to query and set the algorithm.
Hg-commit: 1659b11f5c925913d7bcde16eaaa0bfc63c5f38f
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88c06622
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| 25-Jan-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
commit after merge
Hg-commit: 5462df9e9c3eff3493c9f6fbdf6f5b962f02dc81
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8bac8e12
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| 23-Jan-2013 |
Jed Brown <jed@59A2.org> |
Initialize variable to appease compiler
Hg-commit: 91eebf0dc205bdd6404d77851c7d19b47a73ef5f
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da80777b
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| 24-Jan-2013 |
Karl Rupp <rupp@mcs.anl.gov> |
Fixed a lot of warnings issued by nightly builds.
Hg-commit: bb7830f8063713f2056fa10a7a6289debea1f614
|