Merge branch 'jolivet/checkbadSource' into 'main'

checkbadSource: enforce proper style in makefiles

See merge request petsc/petsc!8802

checkbadSource: enforce proper style in makefiles

Merge branch 'barry/2023-12-22/rm-libbase' into 'main'

LIBBASE is no longer used in make so remove it

See merge request petsc/petsc!7139

LIBBASE is no longer used in make so remove it

Merge branch 'barry/2023-10-25/rename-rules-doc' into 'main'

Rename rules.doc and rules.utils because GitLab treats the former as a MS Word document.

See merge request petsc/petsc!6965

Rename rules.doc and rules.utils because GitLab treats the former as a MS Word document.

Thanks-to: Jed Brown

Merge branch 'barry/2023-06-22/-add-out-of-place-fortran-stubs' into 'main'

Add support for generating fortran stubs out of the source directory and into PETSC_ARCH

See merge request petsc/petsc!66

Merge branch 'barry/2023-06-22/-add-out-of-place-fortran-stubs' into 'main'

Add support for generating fortran stubs out of the source directory and into PETSC_ARCH

See merge request petsc/petsc!6627

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Allow generatefortranstubs.py to generate the stubs and module files in the PETSC_ARCH directory

Merge branch 'barry/2023-03-17/rm-unneeded-test-from-makefiles' into 'main'

simplify/cleanup makefile system

See merge request petsc/petsc!6201

non-test and tutorial makefiles only need rules.doc not the full rules

Commit-type: documentation

Only makefiles in the test and tutorial directories need lib/petsc/conf/test

Commit-type: housekeeping

Merge branch 'barry/2023-03-14/rm-sourceh-from-makefiles' into 'main'

Remove unneeded SOURCE* from makefiles

See merge request petsc/petsc!6186

Remove now unneeded SOURCE* variables from makefiles

Commit-type: configure, housekeeping

Remove unneeded SOURCEH from makefiles

No longer used by docs or build

Merge branch 'jolivet/follow-up-6107-6113' into 'main'

Remove unneeded (empty) makefile variables

See merge request petsc/petsc!6132

Remove empty preprocessor variables

Merge branch 'barry/2023-02-22/rm-locdir' into 'main'

Remove need for hardwired LOCDIR in all makefiles

See merge request petsc/petsc!6113

Remove unneeded declarations of LOCDIR from all the makefiles

Commit-type:documentation

Merge branch 'balay/misc-fixes' into 'main'

petsc4py: revert python3 requirement - as python2 is needed for docs/tarball generation

See merge request petsc/petsc!5620

makefile: fix typo - petsckdir.mk -> petscdir.mk

Merge branch 'barry/2022-05-03/cleanup-makefiles' into 'main'

remove unneeded stuff from makefiles

See merge request petsc/petsc!5211

Add -include */petscdir.mk to makefile that lacked it

for i in `git ls-files | grep makefile | xargs grep -L petscdir.mk`; do
echo $i ;
str=`echo $i |sed -e 's?[-a-zA-Z0-9]*/?../?g' -e 's?makef

Add -include */petscdir.mk to makefile that lacked it

for i in `git ls-files | grep makefile | xargs grep -L petscdir.mk`; do
echo $i ;
str=`echo $i |sed -e 's?[-a-zA-Z0-9]*/?../?g' -e 's?makefile?petsckdir.mk?g'` ;
cp $i tmp
echo "-include $str" > $i
cat tmp >> $i
done

Commit-type: makefile, housekeeping
/spend 15m

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remove garbage from makefiles

Including
* unused FLAGS variables
* All: lib that did not work
* stray blank lines etc

Commit-type: housekeeping
/spend 1h

Merge branch 'master' into knepley/feature-plex-functionals

* master: (984 commits)
netcdf: set zlib as optional dependency corretly [wrt --enable-netcdf-4] - otherwise netcdf configure errors out

Merge branch 'master' into knepley/feature-plex-functionals

* master: (984 commits)
netcdf: set zlib as optional dependency corretly [wrt --enable-netcdf-4] - otherwise netcdf configure errors out
fix gcov obj path
-options_table was changed to options_view in 2014 but documentation was not updated to reflect it
configure: fix F2003 test
Dev manual: remove duplicate entry
Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests.
Some minor typos in TS
Add ADIOS2.py which I forgot to git add in the past
Plex ex5: Disable test
Doc: Added note for interface change
KSPLSQRMonitorDefault fixed for quad precision
Tao: Added alternative output for chwirut2 test.
TS ex45,ex46: Removed overly refined tests for faster nightly tests.
KSP ex72: Fixed needlessly long-running PCTFS tests.
SNES ex56: Reduced test size to speed up nightly test suite.
KSPSolve_LSQR: don't compute unused norm of rhs
SNES ex13: Reduced problem sizes for nightly tests.
PetscOptionsDeprecated(): fix for NULL prefix
PetscOptionsDeprecated(): add option to print additional info
SNES ex12: Reduced sizes for BDDC tests.
...

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Merge branch 'master' into knepley/feature-plex-elasticity-test

* master: (1553 commits)
-options_table was changed to options_view in 2014 but documentation was not updated to reflect it
config

Merge branch 'master' into knepley/feature-plex-elasticity-test

* master: (1553 commits)
-options_table was changed to options_view in 2014 but documentation was not updated to reflect it
configure: fix F2003 test
Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests.
Some minor typos in TS
Add ADIOS2.py which I forgot to git add in the past
Plex ex5: Disable test
Doc: Added note for interface change
KSPLSQRMonitorDefault fixed for quad precision
Tao: Added alternative output for chwirut2 test.
TS ex45,ex46: Removed overly refined tests for faster nightly tests.
KSP ex72: Fixed needlessly long-running PCTFS tests.
SNES ex56: Reduced test size to speed up nightly test suite.
KSPSolve_LSQR: don't compute unused norm of rhs
SNES ex13: Reduced problem sizes for nightly tests.
PetscOptionsDeprecated(): fix for NULL prefix
PetscOptionsDeprecated(): add option to print additional info
SNES ex12: Reduced sizes for BDDC tests.
PetscFileRetrieve(): Suppress output to STDERR when downloading a file.
MatMatMult: Fixed unused variable pN.
DMDestroy: Guard call to dm->ops->destroy * Similar guards are in place in many other methods (IS,Vec,Mat) and permit the DM to be destroyed even if DMSetType() was never called.
...

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