Merge branch 'zach/tao-monitor-modernization' into 'main'

Modernize TAO monitoring to resemble TS and friends

See merge request petsc/petsc!9029

Tao - Update monitor functions to work like TS

Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetC

Merge branch 'barry/2026-01-13/ftn-generation-for-context-functions' into 'main'

Fortran generation of interface definitions for functions that take and return context variables (void *ctx and PetCtx ctx)

See merge request petsc/petsc!8956

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Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now t

Add automatic generated fortran support for setting and returning contexts

Major cleanup of the code for setting and returning application (previously called user) contexts
- PetscCtx ctx is now the standard for passing in contexts
- PetscCtxRt ctx is the standard for passing out contexts, including context destroy routines based on PetscCtxDestroyFn

Both of these are typedef to void*

Also removed most use of user and userctx for context arguments now consistently named ctx

Improved documentation on PetscCtx and PetscCtxRt and on how to use contexts (including getting them) from Fortran

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Merge branch 'barry/2025-07-30/fix-matshellsetoperationarg' into 'main'

Complete usage of PetscVoidFn and PetscErrorCodeFn and introduce PetscFortranCallbackFn

See merge request petsc/petsc!8615

Change use of void (*)(void) and void (**)(void) in the PETSc API to PetscVoidFn * and PetscVoidFn ** or PetscErrorCodeFn * or PetscErrorCodeFn **

Merge branch 'hsuh/taobrgn-type-viewer-fix' into 'main'

TaoBRGNSetRegularizationType

See merge request petsc/petsc!8297

TAOBRGN structure improvement, add TaoBRGNSet,GetRegularizationType

Merge branch 'rmills/feature-ml-petscregressor' into 'main'

Add basic PetscRegressor component with support for a few linear regressors

See merge request petsc/petsc!7709

Add initial version PetscRegressor, part of the planned machine learning (ML) toolkit

Co-authored-by: Mr. Hong Zhang <hongzhang@anl.gov>
Co-authored-by: Hansol Suh <hsuh@anl.gov>
Co-authored-by: Bar

Add initial version PetscRegressor, part of the planned machine learning (ML) toolkit

Co-authored-by: Mr. Hong Zhang <hongzhang@anl.gov>
Co-authored-by: Hansol Suh <hsuh@anl.gov>
Co-authored-by: Barry Smith <bsmith@petsc.dev>
Co-authored-by: Toby Isaac <toby.isaac@gmail.com>
Co-authored-by: Satish Balay <balay@mcs.anl.gov>

Mr. Hong Zhang developed the petsc4py interface and examples.
Hansol Suh provided extensive help with updating the code to the latest PETSc coding guidelines and APIs, some documentation development, getting documentation to build correctly, getting new tests into the test harness, and numerous big fixes plus minor changes.
Barry Smith provided extensive feedback and code to get the Fortran interfaces and documentation build working.
Toby Isaac provided a fix to prevent breakage with complex-arithmetic builds.
Satish Balay provided important help with fixing builds.

Thanks-to: Pierre Jolivet <pierre@joliv.et>
Thanks-to: Jed Brown <jed@jedbrown.org>
Thanks-to: Jose Roman <jroman@dsic.upv.es>
Thanks-to: Stefano Zampini <stefano.zampini@gmail.com>

Pierre, Jed, Jose, and Stefano provided extremely helpful feedback and suggestions during the merge review process.

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Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'jose/deprecate-petsc-default' into 'main'

Fix usage of deprecated PETSC_DEFAULT

See merge request petsc/petsc!7707

Fix usage of deprecated PETSC_DEFAULT

Merge branch 'barry/2024-06-15/deprecate-petsc-current' into 'main'

Deprecate the use of PETSC_DEFAULT with PETSC_CURRENT since PETSC_DEFAULT is a...

See merge request petsc/petsc!7634

Deprecate PETSC_DEFAULT for Tao parameters with PETSC_CURRENT and add support for PETSC_DETEREMINE to use default

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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checkbadSource: rules for PetscFunctionBegin and derivatives

Merge branch 'barry/2024-02-06/fix-tao-view-solution' into 'main'

Some Tao monitor options are incorrectly called viewers, yikes and more yikes

See merge request petsc/petsc!7266

Some Tao monitor options are incorrectly called viewers, yikes and more yikes

Correct ``-tao_view_gradient``, ``-tao_view_ls_residual``, ``-tao_view_solution``, and ``-tao_view_stepdirection`

Merge branch 'jacobf/2023-07-18/lint-apply-tao' into 'main'

Linter fixes: TAO

See merge request petsc/petsc!6729

Manual linter fixes: tao

Merge branch 'jacobf/2023-06-30/enable-doc-lint' into 'main'

Enable docs linting

See merge request petsc/petsc!6667

Lint apply: tao