Merge branch 'barry/2024-04-13/fix-sowing-strings' into 'main'

Update PETSc to use sowing bfort that handles string arguments and PETSC_NULL_INT

See merge request petsc/petsc!7480

Update source code removing all unneeded /*@C and associated manual stubs and interfaces

Merge branch 'tisaac/feature-type-generic-petsc-valid-pointer' into 'main'

Implement a type generic PetscValidPointer

See merge request petsc/petsc!6693

Rename PetscValidPointer -> PetscAssertPointer

Deploy new PetscValidPointer, remove PetscValidXXXPointer

Merge branch 'barry/2023-03-08/fix-man-pages-detected-by-lint' into 'main'

Fix many manual pages

See merge request petsc/petsc!6162

Fix manual pages based on reports from Jacob's lint tool

Commit-type: documentation

Merge branch 'jolivet/housekeeping' into 'main'

Some more housekeeping

See merge request petsc/petsc!6130

Docs: small fixes and typos

Merge branch 'jacobf/2022-12-10/petscerrorcode-nodiscard' into 'main'

Feature: Non-discardable PetscErrorCode

See merge request petsc/petsc!5923

Make PetscErrorCode a non-discardable enum

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2022-11-17/fix-collective-on-man-pages/release' into 'release'

Remove unneeded " on xxx" from most Collective comments in manual pages; move no Fortran support to Collective line

Merge branch 'barry/2022-11-17/fix-collective-on-man-pages/release' into 'release'

Remove unneeded " on xxx" from most Collective comments in manual pages; move no Fortran support to Collective line

See merge request petsc/petsc!5850

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Remove unneeded " on xxx" from most Collective comments in manual pages

The phrase was unneeded 99% of the time

I did not remove in the dm directory since another MR is still active that affects th

Remove unneeded " on xxx" from most Collective comments in manual pages

The phrase was unneeded 99% of the time

I did not remove in the dm directory since another MR is still active that affects that directory

Commit-type: documentation
/spend 20m

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Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'stefanozampini/objpython-gettype' into 'main'

petsc4py: implement getters for python type

See merge request petsc/petsc!5417

petsc4py: implement getters for python type

Merge branch 'psanan/docs-sphinx-man-pages' into 'main'

Integrate Man Pages into Sphinx Docs

Closes #1132 and #1015

See merge request petsc/petsc!4989

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (wor

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (word.rstrip(","), comma)

def _process_stripped_line(line):
return " ".join(map(_process_word, line.split()))

start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")

def process_file(filename_full):
with fileinput.FileInput(filename_full, inplace=True) as f:
in_block = False
for line in f:
line_stripped = line.strip()
# end ".seealso blocks" on a blank line or C-style comment close
line_modified = None
if not line_stripped:
in_block = False
elif line_stripped.endswith("*/"):
in_block = False
else:
match = re.match(start_pattern,
line) # not stripped line
if match:
indent = " " * len(match.group(1))
in_block = True
line_modified = match.group(
1) + _process_stripped_line(
match.group(2).strip())
elif in_block:
line_modified = indent + _process_stripped_line(
line_stripped)
if line_modified:
print(line_modified) # prints to the file
else:
print(line, end="") # prints to the file

BASE_DIRS = ["src", "include"]
EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]
EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]

def main():
""" Process everything """
for base in BASE_DIRS:
for root, dirs, files in os.walk(base):
for filename in files:
if os.path.splitext(filename)[1] in EXT:
filename_full = os.path.join(root, filename)
print("FILE ---", filename_full)
process_file(filename_full)
for exclude_dir in EXCLUDE_DIRS:
if exclude_dir in dirs:
dirs.remove(exclude_dir)

if __name__ == "__main__":
main()
```

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Merge branch 'barry/2022-03-30/strip-petscall-petsctrymethod' into 'main'

Do not wrap PetscTryMethod() PetscUseMethod() in PetscCall

See merge request petsc/petsc!5051

Do not wrap PetscTryMethod() PetscUseMethod() in PetscCall

It produces shadow declarations and also serves no purpose since these macros do the appropriate error checking already

There may be addit

Do not wrap PetscTryMethod() PetscUseMethod() in PetscCall

It produces shadow declarations and also serves no purpose since these macros do the appropriate error checking already

There may be additions needed for running with a static error checker

Commit-type: error-checking
/spend 15m
Reported-by:
Lisandro Dalcin <dalcinl@gmail.com>

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Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889