interface - OpenGrok history log for /petsc/src/ts/interface

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
34ce612b	06-Sep-2019	Satish Balay <balay@mcs.anl.gov>	Merge branch 'barry/2019-09-02/add-to-tsfunctiondomainerror-docs' into 'master' Improve manual page for TSSetFunctionDomainError(), include references for... See merge request petsc/petsc!2001 /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADIOS.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/mpi4py.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/pthread.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/options/arch.py /petsc/config/examples/arch-ci-freebsd-c-single-opt.py /petsc/config/examples/arch-ci-freebsd-cxx-cmplx-64idx-dbg.py /petsc/config/examples/arch-ci-freebsd-cxx-cmplx-pkgs-dbg.py /petsc/config/examples/arch-ci-freebsd-cxx-pkgs-opt.py /petsc/config/examples/arch-ci-freebsd-pkgs-opt.py /petsc/config/examples/arch-ci-linux-IPL64.py 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/petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/ts/adapt/interface/tsadapt.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex16.c /petsc/src/ts/examples/tutorials/ex20.c /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/multirate/output/ex6_1_alt.out /petsc/src/ts/examples/tutorials/multirate/output/ex7_1_alt.out /petsc/src/ts/examples/tutorials/multirate/output/ex7_3_alt.out /petsc/src/ts/examples/tutorials/output/ex31_4_alt_2.out ts.c /petsc/src/vec/is/is/utils/isdiff.c
c771d45a	04-Sep-2019	Satish Balay <balay@mcs.anl.gov>	Merge branch 'hongzh/improve-adjoint-logging' into 'master' Hongzh/improve adjoint logging See merge request petsc/petsc!1984 /petsc/CONTRIBUTING /petsc/README.md /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/ml.py /petsc/config/BuildSystem/config/packages/openmp.py /petsc/config/BuildSystem/config/packages/pnetcdf.py /petsc/config/BuildSystem/config/packages/revolve.py /petsc/config/PETSc/Configure.py /petsc/include/petsc/private/isimpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petscis.h /petsc/include/petsclayouthdf5.h /petsc/lib/petsc/bin/extract.py /petsc/lib/petsc/bin/maint/checkBuilds.py /petsc/lib/petsc/bin/maint/confignightly/default 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6bc98fa9	02-Sep-2019	Barry Smith <bsmith@mcs.anl.gov>	Improve manual page for TSSetFunctionDomainError(), include references for handling related domain errors in underlying SNESSolve() TSAdapte monitor and -info now report rejection of timesteps due t Improve manual page for TSSetFunctionDomainError(), include references for handling related domain errors in underlying SNESSolve() TSAdapte monitor and -info now report rejection of timesteps due to user provided TSSetFunctionDomainError()s Add new question to FAQ on handling infeasible (out of domain) states in TS and SNES Commit-type: style-fix, feature, documentation Reported-by: Steve <stevenbenbow@quintessa.org> show more ... /petsc/CONTRIBUTING /petsc/README.md /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/cuda.py 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4c500f23	15-Aug-2019	Pierre Jolivet <pierre.jolivet@enseeiht.fr>	Typos. /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/headers.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADOLC.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py 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7f59fb53	02-Aug-2019	Hong Zhang <hongzhang@anl.gov>	Make an extra stage for TSAdjointSolve Use macro so that Barry won't yell at me. /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/headers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADOLC.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/Trilinos.py 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57a5760d	02-Jul-2019	William Gropp <wgropp@illinois.edu>	Merge from doc-fixes branch /petsc/.travis.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/c2html.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/lgrind.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/libraryOptions.py /petsc/config/examples/arch-c-exodus-dbg-builder.csh /petsc/config/examples/arch-cuda-double.csh /petsc/config/examples/arch-cuda-single.csh /petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py /petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py /petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py /petsc/config/examples/arch-linux-analyzer.py /petsc/config/examples/arch-linux-clang-avx.py /petsc/config/examples/arch-linux-cmplx-gcov.py /petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py /petsc/config/examples/arch-linux-gcc-cxx-avx2.py /petsc/config/examples/arch-linux-knl.py /petsc/config/examples/arch-linux-opt-misc.py /petsc/config/examples/arch-linux-pgi.py /petsc/config/examples/arch-linux-pkgs-64idx.py /petsc/config/examples/arch-linux-pkgs-cxx-mlib.py /petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py /petsc/config/examples/arch-linux-pkgs-gcov.py /petsc/config/examples/arch-linux-pkgs-opt.py /petsc/config/examples/arch-linux-pkgs-valgrind.py /petsc/config/examples/arch-olcf-summit-opt.csh 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f22e0265	19-Jun-2019	Barry Smith <bsmith@mcs.anl.gov>	Remove dead Matlab code, fix typo, fix caste needed for const free Commit-type: portability-fix Reported-by: Satish Balay <balay@mcs.anl.gov> /petsc/include/petsc/private/petscimpl.h /petsc/include/petscmat.h /petsc/include/petscsys.h /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/docs/website/documentation/installation.html /petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c /petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c /petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h /petsc/src/ksp/pc/impls/redistribute/redistribute.c /petsc/src/mat/examples/tests/ex176.c /petsc/src/mat/examples/tests/output/ex176_1.out /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c /petsc/src/mat/impls/aij/mpi/mpiov.c /petsc/src/mat/impls/aij/mpi/mpiptap.c /petsc/src/mat/impls/aij/seq/fdaij.c /petsc/src/mat/impls/aij/seq/matptap.c /petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu /petsc/src/mat/impls/baij/mpi/baijov.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/snes/interface/snes.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/utils/memc.c ts.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/utils/comb.c /petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.c /petsc/src/vec/vscat/impls/mpi3/vpscat.c
580bdb30	07-Jun-2019	Barry Smith <bsmith@mcs.anl.gov>	Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms Replace a couple multi-mallocs with a single malloc Replace backwards loops in MatSetValues_() Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms Replace a couple multi-mallocs with a single malloc Replace backwards loops in MatSetValues_() with PetscArraymove() Commit-type: style-fix, feature show more ... /petsc/.gitmessage /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/libjpeg.py /petsc/config/BuildSystem/config/packages/libpng.py 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9e336e28	06-Jun-2019	Patrick Sanan <patrick.sanan@gmail.com>	TSSetFromOptions() man page: formatting fix /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/PETSc/options/arch.py /petsc/config/PETSc/options/petscdir.py /petsc/config/PETSc/options/scalarTypes.py /petsc/include/petsc/private/petschypre.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petsclog.h /petsc/src/docs/website/download/index.html /petsc/src/docs/website/index.html /petsc/src/mat/examples/tests/ex229.c /petsc/src/mat/examples/tests/output/ex229_1.out /petsc/src/mat/impls/mffd/mffd.c /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/eventlog.c ts.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /petsc/src/vec/vec/interface/rvector.c
8f199f4d	04-Jun-2019	Patrick Sanan <patrick.sanan@gmail.com>	TSGetTime() man page: add .seealso for TSGetStepNumber() /petsc/config/configure.py /petsc/src/benchmarks/benchmarkExample.py /petsc/src/dm/impls/plex/plexhdf5.c /petsc/src/snes/examples/tutorials/ex5.c /petsc/src/sys/logging/plog.c ts.c
6b221cbe	03-Jun-2019	Patrick Sanan <patrick.sanan@gmail.com>	TSSetConvergedReason() man page: typo/format fixes /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/openblas.py /petsc/config/BuildSystem/config/packages/tetgen.py /petsc/config/PETSc/Configure.py /petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py /petsc/config/examples/arch-linux-pkgs-64idx.py /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petsc/private/petschypre.h /petsc/include/petscfe.h /petsc/include/petscsnes.h /petsc/makefile /petsc/src/dm/dt/dualspace/impls/bdm/dspacebdm.c /petsc/src/dm/dt/dualspace/impls/bdm/makefile /petsc/src/dm/dt/dualspace/impls/makefile /petsc/src/dm/dt/fe/impls/basic/febasic.c /petsc/src/dm/dt/fe/interface/fe.c /petsc/src/dm/dt/fe/interface/fegeom.c /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/impls/da/hypre/mhyp.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_2.out /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/impls/plex/plexsection.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmi.c /petsc/src/dm/interface/dmregall.c /petsc/src/dm/label/dmlabel.c /petsc/src/ksp/ksp/examples/tutorials/ex29.c /petsc/src/ksp/ksp/examples/tutorials/ex55.c /petsc/src/ksp/pc/impls/hypre/hypre.c /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/examples/tests/ex225.c /petsc/src/mat/examples/tests/ex93.c /petsc/src/mat/impls/hypre/mhypre.c /petsc/src/snes/examples/tutorials/ex19.c /petsc/src/snes/examples/tutorials/ex24.c /petsc/src/snes/examples/tutorials/ex56.c /petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_0.out /petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_1.out /petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_2.out /petsc/src/snes/examples/tutorials/output/ex24_2d_bdmq1_p0_0.out /petsc/src/snes/examples/tutorials/output/ex24_2d_bdmq1_p0_2.out /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/sys/logging/plog.c /petsc/src/sys/objects/pinit.c /petsc/src/tao/examples/tutorials/output/ex1_1.out /petsc/src/tao/examples/tutorials/output/ex2_2.out ts.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/impls/hypre/vhyp.c /petsc/src/vec/vec/impls/hypre/vhyp.h
d083f849	01-Jun-2019	Barry Smith <bsmith@mcs.anl.gov>	Update the use of Collective on in the manual pages to reflect the new style Commit-type: style-fix, documentation Thanks-to: Patrick Sanan <patrick.sanan@gmail.com> /petsc/.gitignore /petsc/.hgignore /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/config/types.py /petsc/config/BuildSystem/config/utilities/missing.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/arch.py /petsc/config/PETSc/options/libraryOptions.py /petsc/include/petsc/mpiuni/mpi.h /petsc/include/petsc/private/hashmap.h /petsc/include/petsc/private/hashmapiv.h /petsc/include/petsc/private/hashset.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petscao.h /petsc/include/petsccharacteristic.h /petsc/include/petscdmdatypes.h 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bfcb38ea	27-May-2019	Patrick Sanan <patrick.sanan@gmail.com>	Man pages: remove .keywords: fields This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20), but it doesn't seem to be unif Man pages: remove .keywords: fields This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20), but it doesn't seem to be uniformly used or maintained. Thus, remove all .keywords: fields, and a following blank line, if present. This is accomplished with GNU sed (gsed on OS X), with the following commands. Warning that this type of command can corrupt a .git directory, so be cautious in reusing or modifying these commands. They first look for and delete matching lines with a following line consisting of only whitespace, and then delete any remaining matching lines. find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s$/d}' {} + find src/ -type f -exec gsed -i '/keywords:/d' {} + find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s$/d}' {} + find include/ -type f -exec gsed -i '/keywords:/d' {} + Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed show more ... /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MatlabEngine.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/cuda.py 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/petsc/src/vec/vec/examples/tutorials/ex6.c /petsc/src/vec/vec/examples/tutorials/ex6f.F90 /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec1.c /petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu /petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/veccreate.c /petsc/src/vec/vec/interface/vecreg.c /petsc/src/vec/vec/interface/vecregall.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/tagger/interface/tagger.c /petsc/src/vec/vec/utils/tagger/interface/taggerregi.c /petsc/src/vec/vec/utils/vecio.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/interface/dlregisvecscat.c /petsc/src/vec/vscat/interface/vscreate.c
fccb18fb	12-May-2019	BarryFSmith <bsmith@mcs.anl.gov>	Merged in barry/cleanup-petscstringviewer (pull request #1630) Work on PetscViewerString. Fix use of PetscInt -> size_t, add new functionality, add usage by basic solver objects, add test case /petsc/config/BuildSystem/config/packages/pARMS.py /petsc/config/PETSc/Configure.py /petsc/gmakefile.test /petsc/include/petsc/finclude/petscksp.h /petsc/include/petsc/private/dmnetworkimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/viewerimpl.h /petsc/include/petscdmnetwork.h /petsc/include/petscis.h /petsc/include/petscksp.h /petsc/include/petscsf.h /petsc/include/petscviewer.h /petsc/include/petscviewerhdf5.h /petsc/lib/petsc/bin/petsclogformat.py /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/plex/plexcheckinterface.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tests/ex30.c /petsc/src/ksp/ksp/examples/tests/ex6.c /petsc/src/ksp/ksp/examples/tutorials/ex72.c /petsc/src/ksp/ksp/impls/cg/gltr/gltr.c /petsc/src/ksp/ksp/impls/cg/nash/nash.c /petsc/src/ksp/ksp/impls/cg/stcg/stcg.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itregis.c /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/ksp/pc/impls/bddc/bddcfetidp.c /petsc/src/ksp/pc/impls/gasm/gasm.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/examples/tests/ex27.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/aij/seq/aijhdf5.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/network/power/power.c /petsc/src/snes/interface/snes.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/sys/classes/viewer/impls/hdf5/ftn-custom/zhdf5f.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/classes/viewer/impls/string/stringv.c /petsc/src/sys/classes/viewer/interface/dupl.c /petsc/src/sys/classes/viewer/interface/viewa.c /petsc/src/sys/logging/plog.c /petsc/src/tao/bound/impls/bnk/bnk.c /petsc/src/tao/bound/impls/bqnk/bqnk.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/quadratic/impls/gpcg/gpcg.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out /petsc/src/ts/examples/tutorials/ex3.c /petsc/src/ts/examples/tutorials/output/ex3_stringview.out /petsc/src/ts/examples/tutorials/output/ex3_stringview_euler.out ts.c /petsc/src/vec/is/sf/examples/tutorials/ex1.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/ftn-custom/makefile /petsc/src/vec/is/utils/ftn-custom/zhdf5io.c /petsc/src/vec/is/utils/hdf5io.c /petsc/src/vec/is/utils/isio.c /petsc/src/vec/is/utils/makefile /petsc/src/vec/vec/utils/vecio.c /petsc/src/vec/vscat/examples/ex9.c /petsc/src/vec/vscat/examples/makefile /petsc/src/vec/vscat/examples/output/ex9_1.out
36a9e3b9	06-May-2019	Barry Smith <bsmith@mcs.anl.gov>	Work on PetscViewerString. Fix use of PetscInt -> size_t, add new functionality, add usage by basic solver objects, add test case Commit-type: style-fix, feature, documentation, example /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/fftw.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py 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d76be551	10-May-2019	Hong Zhang <hongzhang@anl.gov>	Fix the deprecations for some TSAdjoint functions Funded-by: Project: FASTMath adjoint Time: 1.0 hours Reported-by: Barry Smith <bsmith@mcs.anl.gov> Thanks-to: /petsc/include/petscts.h sensitivity/tssen.c
7e33834a	10-May-2019	Hong Zhang <hongzhang@anl.gov>	Merged in hongzh/ts-adjoint2 (pull request #1562) Second-order adjoint ODE solvers Approved-by: BarryFSmith <bsmith@mcs.anl.gov> /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/make.py 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/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/explicit/rk/rk.h /petsc/src/ts/impls/implicit/theta/theta.c sensitivity/tssen.c ts.c /petsc/src/ts/trajectory/impls/basic/trajbasic.c /petsc/src/ts/trajectory/impls/memory/trajmemory.c /petsc/src/ts/trajectory/interface/traj.c /petsc/src/ts/utils/dmplexts.c /petsc/src/vec/is/is/impls/block/block.c /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/is/is/impls/stride/stride.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/examples/tests/ex49.c /petsc/src/vec/vec/examples/tests/makefile /petsc/src/vec/vec/examples/tests/output/ex49_1.out /petsc/src/vec/vec/examples/tutorials/ex11f.F /petsc/src/vec/vec/examples/tutorials/ex11f90.F90 /petsc/src/vec/vec/examples/tutorials/ex12f.F90 /petsc/src/vec/vec/examples/tutorials/ex16f.F90 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9ffb3502	30-Apr-2019	Hong Zhang <hongzhang@anl.gov>	TSAdjoint: set TSTrajectory not to use TSHistory Funded-by: Project: FASTMath adjoint Time: 0.5 hours Reported-by: Thanks-to: /petsc/include/petscts.h /petsc/src/ts/examples/tutorials/ex20opt_ic.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/optimal_control/ex1.c sensitivity/tssen.c /petsc/src/ts/trajectory/interface/traj.c
298bade4	25-Apr-2019	Hong Zhang <hongzhang@anl.gov>	Add object reference for JacobianP - Move the setup from TSAdjont and TSForward to TS. - TSSetRHSJacobianP has to be called before TSSetUp. Funded-by: Project: FASTMath adjoint Time: 1.5 hours Repo Add object reference for JacobianP - Move the setup from TSAdjont and TSForward to TS. - TSSetRHSJacobianP has to be called before TSSetUp. Funded-by: Project: FASTMath adjoint Time: 1.5 hours Reported-by: Stefano Zampini Thanks-to: show more ... /petsc/src/ts/examples/tutorials/ex20adj.c sensitivity/tssen.c ts.c
b1e111eb	24-Apr-2019	Hong Zhang <hongzhang@anl.gov>	Change names for Hessian functions Funded-by: Project: FASTMath adjoint Time: 0.5 hours Reported-by: Thanks-to: /petsc/include/petscts.h /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/implicit/theta/theta.c sensitivity/tssen.c
369cf35f	24-Apr-2019	Hong Zhang <hongzhang@anl.gov>	Add notes for Hessian callbacks Funded-by: Project: FASTMath adjoint Time: 0.5 hours Reported-by: Thanks-to: sensitivity/tssen.c
8e224c67	24-Apr-2019	Hong Zhang <hongzhang@anl.gov>	Replace PetscStrcmp with PetscObjectTypeCompare Funded-by: Project: FASTMath adjoint Time: Reported-by: Stefano Zampini Thanks-to: /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/output/ex20opt_p_2.out /petsc/src/ts/examples/tutorials/output/ex20opt_p_4.out sensitivity/tssen.c
881c1a9b	22-Apr-2019	Hong Zhang <hongzhang@anl.gov>	TSAdjoint: add check for checkpointing settings - Error out when -ts_trajectory_type basic and -ts_trajectory_solution_only are used together - The basic type simply saves everything to disk and doe TSAdjoint: add check for checkpointing settings - Error out when -ts_trajectory_type basic and -ts_trajectory_solution_only are used together - The basic type simply saves everything to disk and does not recompute stage values needed by TSAdjoint - Ugly workaround. Erroring out from TSTrajectory could be better Funded-by: Project: FASTMath adjoint Time: 2.0 hours Reported-by: Thanks-to: show more ... /petsc/include/petscts.h /petsc/src/ts/impls/explicit/rk/rk.c sensitivity/tssen.c /petsc/src/ts/trajectory/impls/basic/trajbasic.c /petsc/src/ts/trajectory/interface/traj.c
f63bf25f	21-Apr-2019	Hong Zhang <hongzhang@anl.gov>	Use TS communicator instead of PETSC_COMM_WORLD Funded-by: Project: FASTMath adjoint Time: 0.5 hours Reported-by: Barry Smith Thanks-to: /petsc/src/ts/examples/tutorials/optimal_control/ex1.c /petsc/src/ts/examples/tutorials/power_grid/ex3.h /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c sensitivity/tssen.c
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