Merge branch 'barry/2023-12-21/rm-unneeded-mansec' into 'main'

Remove MANSEC from makefiles it is not needed in, tutorials and tests

See merge request petsc/petsc!7137

Remove MANSEC from makefiles it is not needed in, tutorials and tests

Merge branch 'barry/2023-03-17/rm-unneeded-test-from-makefiles' into 'main'

simplify/cleanup makefile system

See merge request petsc/petsc!6201

Remove need for seperate lib/petsc/conf/test file by merging with rules file

Commit-type: maintainability

Merge branch 'barry/2023-02-22/rm-locdir' into 'main'

Remove need for hardwired LOCDIR in all makefiles

See merge request petsc/petsc!6113

Remove unneeded declarations of LOCDIR from all the makefiles

Commit-type:documentation

Merge branch 'barry/2022-05-03/cleanup-makefiles' into 'main'

remove unneeded stuff from makefiles

See merge request petsc/petsc!5211

Get values of makefile SOURCE etc from the file system instead of makefiles

Use SUBMANSEC from include files for manual sections instead of the makefile

Unfortunately this has to be one large commi

Get values of makefile SOURCE etc from the file system instead of makefiles

Use SUBMANSEC from include files for manual sections instead of the makefile

Unfortunately this has to be one large commit since the changes all have to be done at once

Commit-type: docs
/spend 10m

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remove garbage from makefiles

Including
* unused FLAGS variables
* All: lib that did not work
* stray blank lines etc

Commit-type: housekeeping
/spend 1h

Merge branch 'adams/landau-sppic-omp-bug' into 'main'

Added ts test that integrates Landau with particles

See merge request petsc/petsc!5017

added ts test that integrates Landau with paricles with OMP. Fails with OMP and AMR

Merge branch 'barry/2020-09-07/matstructure-unknown' into 'master'

Barry/2020 09 07/matstructure unknown

See merge request petsc/petsc!3182

Add TSARKIMEXTestMassIdentity() that is used in debug mode to check the use of ARKIMEX for
a non-trivial mass matrix when an explicit stage is used

Commit-type: error-checking
/spend 1h
Reported-by:

Add TSARKIMEXTestMassIdentity() that is used in debug mode to check the use of ARKIMEX for
a non-trivial mass matrix when an explicit stage is used

Commit-type: error-checking
/spend 1h
Reported-by: Brad Aagaard <baagaard@usgs.gov>
Reported-by: Matthew Knepley <knepley@gmail.com>
Reported-by: Ed Bueler <elbueler@alaska.edu>
Thanks-to: Jed Brown <jed@jedbrown.org>

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Merge remote-tracking branch 'origin/maint'

Merge remote-tracking branch 'origin/jolivet/fix-symlink-free' into maint

Single petscdir.mk

Merge branch 'barry/2020-03-17/add-gnumakefile' into 'master'

Provide support for not setting PETSC_DIR when gnumake is being used; this...

See merge request petsc/petsc!2604

Provide support for not setting PETSC_DIR when gnumake is being used; this will prevent some petsc-maint/petsc-users email threads

Commit-type: error-checking, testing-fix, feature, example
Thanks-t

Provide support for not setting PETSC_DIR when gnumake is being used; this will prevent some petsc-maint/petsc-users email threads

Commit-type: error-checking, testing-fix, feature, example
Thanks-to: Jed Brown <jed@jedbrown.org>
Thanks-to: Lisandro Dalcin <dalcinl@gmail.com>

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Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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