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a3d0cf8525-Oct-2020 Matthew G. Knepley <knepley@gmail.com>

TS ex45: Add new MMS solutions and test convergence
- Many new tests


/petsc/.gitlab-ci.yml
/petsc/CONTRIBUTING
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5780c0b314-Oct-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release' into master


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97b5471d12-Oct-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-plex-interpolate-pyramid' into 'master'

Plex: Added pyramid cell type

See merge request petsc/petsc!3329


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06ad472210-Oct-2020 Patrick Sanan <patrick.sanan@gmail.com>

Docs: Fix broken links

Fix broken links and other formatting errors expose by
"make linkcheck" in the Sphinx docs root.

This includes updating links in the .rst files, adding missing examples to EX

Docs: Fix broken links

Fix broken links and other formatting errors expose by
"make linkcheck" in the Sphinx docs root.

This includes updating links in the .rst files, adding missing examples to EXAMPLESC
sections in makefiles, and fixing entries in BibTeX files.

show more ...


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/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
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/petsc/src/mat/interface/matreg.c
/petsc/src/mat/tests/ex114.c
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/petsc/src/mat/tests/ex75.c
/petsc/src/mat/tests/output/ex114.out
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/petsc/src/mat/tests/output/ex114_6.out
/petsc/src/mat/tests/output/ex114_7.out
/petsc/src/mat/tests/output/ex114_8.out
/petsc/src/mat/tutorials/ex5cu.cu
/petsc/src/mat/utils/matstash.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/ex3k.kokkos.cxx
/petsc/src/snes/tutorials/makefile
/petsc/src/snes/tutorials/output/ex13_kokkos.out
/petsc/src/sys/error/signal.c
/petsc/src/sys/objects/version.c
/petsc/src/sys/tests/options/ex55.c
/petsc/src/sys/tests/options/output/ex55_5a.out
/petsc/src/sys/tests/options/output/ex55_5b.out
/petsc/src/sys/tests/options/output/ex55_5c.out
advection-diffusion-reaction/makefile
makefile
power_grid/makefile
/petsc/src/ts/utils/dmnetworkts.c
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
/petsc/src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/tests/ex26f.F90
/petsc/src/vec/vec/tests/makefile
/petsc/src/vec/vec/tests/output/ex26f_1.out
da9060c410-Oct-2020 Matthew G. Knepley <knepley@gmail.com>

Plex: Added pyramid cell type - Added pyrmaid reference cell - Added -dm_plex_ref_type for DMPlexCreateReferenceCellByType() - Added interpolation of pyramids - Added pyramid interpolation test i

Plex: Added pyramid cell type - Added pyrmaid reference cell - Added -dm_plex_ref_type for DMPlexCreateReferenceCellByType() - Added interpolation of pyramids - Added pyramid interpolation test in Plex ex7 - Temporary fix for pyramids in refinement

show more ...


/petsc/.gitignore
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/petsc/.travis.yml
/petsc/CONTRIBUTING
/petsc/LICENSE
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/framework.py
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/petsc/src/snes/tutorials/output/ex69_q2q1_conv.out
/petsc/src/snes/utils/convest.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/draw/impls/x/xops.c
/petsc/src/sys/classes/draw/interface/dsave.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/objects/version.c
/petsc/src/sys/tests/options/ex55.c
/petsc/src/sys/tests/options/output/ex55_5a.out
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output/ex18_adv_0.out
output/ex18_adv_1.out
output/ex18_adv_3_ex.out
/petsc/src/ts/utils/dmnetworkts.c
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
/petsc/src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp
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649ef02209-Oct-2020 Matthew Knepley <knepley@gmail.com>

DM: Fix nullspace handling
- Now, nullspace constructors construct a nullspace for the entire DM,
but based on the singularity of an operator connected with the given
field
- remove special handling

DM: Fix nullspace handling
- Now, nullspace constructors construct a nullspace for the entire DM,
but based on the singularity of an operator connected with the given
field
- remove special handling in SNESSetUpMatrices()
- Now all nullspaces are created in DMCreateMatrix()
- Fixed bug in DMSNESCheckJacobian()

show more ...


/petsc/.gitignore
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/petsc/.travis.yml
/petsc/CONTRIBUTING
/petsc/LICENSE
/petsc/config/BuildSystem/config/base.py
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/petsc/src/ksp/ksp/tutorials/ex71.c
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/petsc/src/mat/impls/baij/mpi/mpibaij.c
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/petsc/src/snes/utils/convest.c
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/petsc/src/sys/classes/bag/bag.c
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/petsc/src/sys/classes/draw/interface/dsave.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/objects/version.c
/petsc/src/sys/tests/options/ex55.c
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ex76.c
output/ex76_2d_tri_p2_p1_p1.out
output/ex76_2d_tri_p2_p1_p1_conv.out
output/ex76_2d_tri_p2_p1_p1_sconv.out
output/ex76_2d_tri_p2_p1_p1_tconv.out
output/ex76_2d_tri_p3_p2_p2.out
/petsc/src/ts/utils/dmnetworkts.c
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/ts/utils/dmplexts.c
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
/petsc/src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/tests/ex26f.F90
/petsc/src/vec/vec/tests/makefile
/petsc/src/vec/vec/tests/output/ex26f_1.out
410585f622-May-2020 Hong Zhang <hongzhang@anl.gov>

Fix ColPack, ADOLC builds, and add adolc to CI tests (and related test fixes)


/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/ADOLC.py
/petsc/config/BuildSystem/config/packages/ColPack.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py
autodiff/adolc-utils/drivers.cxx
autodiff/adr_ex1.cxx
autodiff/adr_ex5adj.cxx
autodiff/adr_ex5adj_mf.cxx
autodiff/ex16adj.cxx
autodiff/ex16opt_ic.cxx
autodiff/output/adr_ex5adj_1.out
autodiff/output/adr_ex5adj_2.out
autodiff/output/adr_ex5adj_mf_1.out
a8c0819721-May-2020 Hong Zhang <hongzhang@anl.gov>

Fix autodiff errors due to locked vec


/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/examples/arch-olcf-frontier-cuda-beta.py
/petsc/lib/petsc/conf/rules
/petsc/makefile
/petsc/src/docs/doctext/html.def
/petsc/src/docs/doctext/htmltabl.def
/petsc/src/docs/doctext/latex.def
/petsc/src/docs/doctext/nroff.def
/petsc/src/docs/doctext/petsc.group
/petsc/src/docs/doctext/petscapp.cfg
/petsc/src/docs/doctext/readme
/petsc/src/docs/manualpages-sec/header_LANDAU
/petsc/src/docs/sphinx_docs/manual/getting_started.rst
/petsc/src/docs/sphinx_docs/manual/high_level_mg.rst
/petsc/src/docs/sphinx_docs/manual/images/danumbering.fig
/petsc/src/docs/sphinx_docs/manual/images/ghost.fig
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/petsc/src/docs/sphinx_docs/manual/index.rst
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/petsc/src/docs/sphinx_docs/manual/profiling.rst
/petsc/src/docs/sphinx_docs/manual/snes.rst
/petsc/src/docs/sphinx_docs/manual/ts.rst
/petsc/src/docs/website/documentation/bugreporting.html
/petsc/src/docs/website/documentation/codemanagement.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmresimpl.h
/petsc/src/ksp/ksp/tests/ex21.c
/petsc/src/mat/impls/aij/seq/kokkos/aijkokkosimpl.hpp
autodiff/adolc-utils/drivers.cxx
autodiff/adr_ex1.cxx
autodiff/adr_ex5adj.cxx
autodiff/ex16adj.cxx
autodiff/ex16adj_tl.cxx
autodiff/ex16opt_ic.cxx
autodiff/makefile
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/vec/interface/vector.c
aed1703528-Sep-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint' into master


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/package.py
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/petsc/config/BuildSystem/config/packages/ADIOS2.py
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/petsc/config/BuildSystem/config/packages/PTScotch.py
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/petsc/config/BuildSystem/config/packages/Triangle.py
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/petsc/config/BuildSystem/config/packages/blis.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
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/petsc/config/BuildSystem/config/packages/fftw.py
/petsc/config/BuildSystem/config/packages/googletest.py
/petsc/config/BuildSystem/config/packages/hara.py
/petsc/config/BuildSystem/config/packages/hpddm.py
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/petsc/config/BuildSystem/config/packages/openmp.py
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/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/pragmatic.py
/petsc/config/BuildSystem/config/packages/radau5.py
/petsc/config/BuildSystem/config/packages/revolve.py
/petsc/config/BuildSystem/config/packages/scalapack.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/BuildSystem/config/packages/spai.py
/petsc/config/BuildSystem/config/packages/sprng.py
/petsc/config/BuildSystem/config/packages/strumpack.py
/petsc/config/BuildSystem/config/packages/sundials.py
/petsc/config/BuildSystem/config/packages/tchem.py
/petsc/config/BuildSystem/config/packages/tetgen.py
/petsc/config/BuildSystem/config/packages/thrust.py
/petsc/config/BuildSystem/config/packages/zlib.py
/petsc/config/BuildSystem/config/packages/zstd.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda11-complex.py
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/petsc/config/petsc_harness.sh
/petsc/include/petsc/finclude/petscvec.h
/petsc/include/petsc/private/kernels/blockinvert.h
/petsc/include/petsc/private/matimpl.h
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/petsc/include/petscaijdevice.h
/petsc/include/petscerror.h
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/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/tutorials/ex5.c
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/petsc/src/dm/impls/swarm/tests/ex4.c
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/petsc/src/dm/interface/dm.c
/petsc/src/dm/partitioner/impls/ptscotch/partptscotch.c
/petsc/src/dm/partitioner/impls/shell/partshell.c
/petsc/src/dm/partitioner/impls/simple/partsimple.c
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/petsc/src/dm/partitioner/tests/output/ex33_ptscotch_strategy_petscpartitioner_ptscotch_strategy-SAFETY.out
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/petsc/src/dm/partitioner/tests/output/ex33_ptscotch_strategy_petscpartitioner_ptscotch_strategy-SPEED.out
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/petsc/src/mat/impls/aij/seq/kokkos/makefile
/petsc/src/mat/impls/aij/seq/makefile
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matregis.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/spectral.c
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/petsc/src/mat/tutorials/ex5cu.cu
/petsc/src/mat/tutorials/makefile
/petsc/src/mat/tutorials/output/ex5cu_0.out
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/tutorials/ex47cu.cu
/petsc/src/snes/tutorials/makefile
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/checkptr.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errabort.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/cuda/handle.c
/petsc/src/sys/objects/cupminit.inc
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/kokkos/kinit.kokkos.cxx
/petsc/src/sys/objects/state.c
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/petsc/src/sys/utils/sortso.c
/petsc/src/tao/constrained/impls/ipm/pdipm.c
/petsc/src/ts/adapt/impls/basic/adaptbasic.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/adapt/impls/glee/adaptglee.c
/petsc/src/ts/impls/implicit/discgrad/makefile
/petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c
/petsc/src/ts/impls/implicit/makefile
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsregall.c
/petsc/src/ts/tests/ex24.c
/petsc/src/ts/tests/output/ex24_1.out
ex16.c
ex16fwd.c
ex19.c
ex20adj.c
/petsc/src/ts/utils/dmnetworkts.c
/petsc/src/ts/utils/dmplexlandau/cuda/landaucu.cu
/petsc/src/ts/utils/makefile
/petsc/src/vec/is/sf/impls/basic/kokkos/sfkok.kokkos.cxx
/petsc/src/vec/is/sf/impls/basic/sfpack.c
/petsc/src/vec/is/sf/impls/basic/sfpack.h
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/vec/impls/mpi/kokkos/makefile
/petsc/src/vec/vec/impls/mpi/kokkos/mpikok.kokkos.cxx
/petsc/src/vec/vec/impls/mpi/makefile
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/pvec2.c
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/seq/bvec1.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/kokkos/makefile
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
/petsc/src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp
/petsc/src/vec/vec/impls/seq/makefile
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/veccreate.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/tests/ex22.c
/petsc/src/vec/vec/tests/ex23.c
/petsc/src/vec/vec/tests/ex28.c
/petsc/src/vec/vec/tests/ex34.c
/petsc/src/vec/vec/tests/ex37.c
/petsc/src/vec/vec/tests/ex38.c
/petsc/src/vec/vec/tests/ex43.c
/petsc/src/vec/vec/tests/ex60.c
/petsc/src/vec/vec/tests/output/ex37_4.out
/petsc/src/vec/vec/tests/output/ex60_1.out
/petsc/src/vec/vec/tutorials/ex1.c
08c4bdbb08-Sep-2020 Lisandro Dalcin <dalcinl@gmail.com>

TSALPHA: Full test coverage


ex40.c
output/ex40_m.out
output/ex40_n_ts_max_reject-0.out
output/ex40_n_ts_max_reject-1.out
output/ex40_n_ts_max_reject-2.out
e6b3262708-Sep-2020 Lisandro Dalcin <dalcinl@gmail.com>

TSALPHA2: Full test coverage


/petsc/src/dm/impls/plex/tests/ex99.c
/petsc/src/dm/impls/plex/tests/output/ex99_msh-hex.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-qua.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-seg.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-tet.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-tri.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-vtx.out
/petsc/src/dm/impls/plex/tests/output/ex99_msh-wed.out
/petsc/src/sys/classes/viewer/tests/ex6.c
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-1_mpiio.out
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-1_stdio.out
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-2_mpiio.out
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-2_stdio.out
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-3_mpiio.out
/petsc/src/sys/classes/viewer/tests/output/ex6_nsize-3_stdio.out
/petsc/src/sys/tutorials/ex5.c
ex44.c
output/ex44_ts_max_reject-0.out
output/ex44_ts_max_reject-1.out
output/ex44_ts_max_reject-2.out
5385558f07-Sep-2020 Lisandro Dalcin <dalcinl@gmail.com>

TSADAPTDSP: Full test coverage


/petsc/src/ts/tests/ex14.c
ex40.c
e5b8ffdf06-Sep-2020 Lisandro Dalcin <dalcinl@gmail.com>

TSBDF: Full test coverage


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/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/include/petsc/finclude/petscbag.h
/petsc/include/petsc/private/cudavecimpl.h
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/petsc/src/dm/f90-mod/petscdmlabel.h
/petsc/src/dm/f90-mod/petscdmplex.h
/petsc/src/dm/f90-mod/petscdmswarm.h
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/petsc/src/docs/tex/manual/part1.tex
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/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/f90-mod/petscksp.h
/petsc/src/ksp/f90-mod/petscpc.h
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/ftn-custom/makefile
/petsc/src/ksp/ksp/impls/gmres/ftn-custom/zgmres2f.c
/petsc/src/ksp/ksp/tutorials/ex5f.F90
/petsc/src/ksp/ksp/tutorials/output/ex5f_orthog1.out
/petsc/src/ksp/ksp/tutorials/output/ex5f_orthog2.out
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/tests/ex18.c
/petsc/src/mat/tests/ex70.c
/petsc/src/snes/f90-mod/petscsnes.h
/petsc/src/snes/f90-mod/petscsnesfas.h
/petsc/src/snes/f90-mod/petscsnesmod.F90
/petsc/src/sys/f90-mod/petscbag.h
/petsc/src/sys/f90-mod/petscdraw.h
/petsc/src/sys/f90-mod/petscerror.h
/petsc/src/sys/f90-mod/petsclog.h
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F90
/petsc/src/sys/f90-mod/petscviewer.h
/petsc/src/sys/objects/cupminit.inc
/petsc/src/sys/objects/options.c
/petsc/src/sys/tests/ex24.c
/petsc/src/sys/tests/output/ex24_1.out
/petsc/src/tao/f90-mod/petsctao.h
/petsc/src/ts/f90-mod/petscts.h
/petsc/src/ts/impls/bdf/bdf.c
ex19.c
output/ex19_bdf_reject_ts_max_reject-0.out
output/ex19_bdf_reject_ts_max_reject-1.out
output/ex19_bdf_reject_ts_max_reject-2.out
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/f90-mod/petscao.h
/petsc/src/vec/f90-mod/petscis.h
/petsc/src/vec/f90-mod/petscvec.h
/petsc/src/vec/f90-mod/petscvecmod.F90
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/tests/ex38.c
/petsc/src/vec/vec/tests/output/ex38_1.out
/petsc/src/vec/vscat/tests/ex5.c
/petsc/src/vec/vscat/tests/output/ex5_1.out
b8582c7c14-Sep-2020 Satish Balay <balay@mcs.anl.gov>

CI: enable -Werror for Intel jobs, and fix builds

update arch-ci-linux-intel-cmplx to use python3 with a manual fix to numpy/core/include/numpy/ndarraytypes.h


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/script.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/dataFilesPath.py
/petsc/config/examples/arch-ci-linux-intel-cmplx.py
/petsc/config/examples/arch-ci-linux-pgi.py
/petsc/config/examples/arch-ci-mswin-intel-cxx-cmplx.py
/petsc/config/examples/arch-ci-mswin-intel.py
/petsc/config/examples/arch-ci-mswin-opt-impi.py
/petsc/config/examples/arch-ci-mswin-uni.py
/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/src/ksp/ksp/impls/cg/pipelcg/pipelcg.c
/petsc/src/ksp/ksp/tests/ex38.c
/petsc/src/ksp/ksp/tests/ex39.c
/petsc/src/ksp/ksp/tests/ex40.c
/petsc/src/ksp/ksp/tests/ex8.c
/petsc/src/ksp/ksp/tutorials/ex18.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/tutorials/ex3.c
/petsc/src/mat/tests/ex237.c
/petsc/src/snes/tutorials/network/power/power.h
/petsc/src/snes/tutorials/network/water/water.h
network/wash/pipe.h
network/wash/wash.h
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/vec/impls/seq/dvec2.c
956f8c0d01-Sep-2020 Barry Smith <bsmith@mcs.anl.gov>

Clean up examples so they run correctly without warnings configured using --with-log=0 and --with-info=0

Make CI pipeline linux job build with these options

Commit-type: testing-fix, style-fix, mai

Clean up examples so they run correctly without warnings configured using --with-log=0 and --with-info=0

Make CI pipeline linux job build with these options

Commit-type: testing-fix, style-fix, maintainability
/spend 1h

show more ...


/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/examples/arch-ci-linux-cxx-cmplx-pkgs-64idx.py
/petsc/include/petsc/finclude/petscksp.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petscerror.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/include/petscviewer.h
/petsc/makefile
/petsc/src/binding/petsc4py/src/PETSc/Viewer.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscvwr.pxi
/petsc/src/dm/dt/fe/tests/ex1.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/daview.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/plex/plexvtu.c
/petsc/src/dm/impls/plex/tests/ex18.c
/petsc/src/dm/impls/plex/tests/ex35.c
/petsc/src/dm/impls/plex/tests/output/ex35_hex.out
/petsc/src/dm/impls/plex/tests/output/ex35_hex_interp.out
/petsc/src/dm/impls/plex/tests/output/ex35_quad.out
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/petsc/src/dm/impls/plex/tests/output/ex35_tet.out
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/petsc/src/dm/impls/plex/tests/output/ex35_tri_interp.out
/petsc/src/dm/impls/plex/tutorials/ex1.c
/petsc/src/dm/impls/plex/tutorials/ex1f90.F90
/petsc/src/dm/impls/swarm/tests/ex2.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/tests/ex21.c
/petsc/src/dm/tests/ex36.c
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/petsc/src/docs/sphinx_docs/conf.py
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/petsc/src/ksp/ksp/impls/cg/pipecg2/makefile
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/ksp/tests/ex18.c
/petsc/src/ksp/ksp/tests/ex49.c
/petsc/src/ksp/ksp/tests/ex6.c
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/petsc/src/ksp/ksp/tests/output/ex49_cg_alt.out
/petsc/src/ksp/ksp/tests/output/ex49_pipecg2.out
/petsc/src/ksp/ksp/tests/output/ex49_pipecg2_alt.out
/petsc/src/ksp/ksp/tutorials/ex2.c
/petsc/src/ksp/ksp/tutorials/ex29.c
/petsc/src/ksp/ksp/tutorials/ex46.c
/petsc/src/ksp/ksp/tutorials/ex79.c
/petsc/src/ksp/ksp/tutorials/output/ex2_pipecg2.out
/petsc/src/ksp/ksp/tutorials/output/ex2_pipecg2_2.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex219f.F90
/petsc/src/mat/tests/ex237.c
/petsc/src/mat/tutorials/ex7.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/tests/ex1.c
/petsc/src/snes/tutorials/ex1f.F90
/petsc/src/snes/tutorials/ex3k.kokkos.cxx
/petsc/src/snes/tutorials/ex56.c
/petsc/src/snes/tutorials/network/ex1.c
/petsc/src/snes/tutorials/network/power/power.c
/petsc/src/snes/tutorials/network/power/power2.c
/petsc/src/snes/tutorials/network/water/water.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/classes/viewer/interface/viewa.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/err.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/cupminit.inc
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/pname.c
/petsc/src/sys/tests/ex12.c
/petsc/src/sys/tutorials/ex16.c
/petsc/src/sys/tutorials/ex16f.F90
advection-diffusion-reaction/ex5opt_ic.c
power_grid/stability_9bus/ex9busdmnetwork.c
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/tutorials/ex5f.F90
/petsc/src/vec/vec/tutorials/performance.c
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/tests/ex4.c
24b15d0910-Sep-2020 Matthew G. Knepley <knepley@gmail.com>

TS ex53: Added spatial convergence check for Terzaghi
- The orders are hard to interpret for me, but match what I looked up


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MPI.py
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ex53.c
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3d5a8a6a02-Sep-2020 Barry Smith <bsmith@mcs.anl.gov>

Improve the error handling and documentation for -snes_lag_jacobian and -snes_lag_preconditioner

Add specific documentation for ROSW.

Commit-type: error-checking, bug-fix, testing-fix, documentatio

Improve the error handling and documentation for -snes_lag_jacobian and -snes_lag_preconditioner

Add specific documentation for ROSW.

Commit-type: error-checking, bug-fix, testing-fix, documentation
/spend 1h
Reported-by: Emil Constantinescu M <emconsta@anl.gov>

show more ...


/petsc/src/snes/interface/snes.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tests/ex8.c
ex8.c
output/ex8_4.out
output/ex8_5.out
f7f0719812-Jul-2020 Barry Smith <bsmith@mcs.anl.gov>

Fix Rosw so allows user to easily use -snes_lag_jacobian

Add unfinished example to test -snes_log_jacobian with Rosw


/petsc/src/snes/interface/snes.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/tests/ex8.c
/petsc/src/ts/tests/output/ex8_1.out
/petsc/src/ts/tests/output/ex8_2.out
advection-diffusion-reaction/output/ex1_1.out
advection-diffusion-reaction/output/ex2_1.out
advection-diffusion-reaction/output/ex2_1_alt.out
advection-diffusion-reaction/output/ex2_1_alt_2.out
advection-diffusion-reaction/output/ex2_1_alt_3.out
advection-diffusion-reaction/output/ex2_1_alt_4.out
advection-diffusion-reaction/output/ex4_1.out
output/ex3_3.out
2a35033912-Jul-2020 Barry Smith <bsmith@mcs.anl.gov>

SeqDense treats ILU as LU allowing PC defaults to work when dense matrix
is not yet known

DMSHELL uses dense format if no format provided.

Fix manual pages for MatFactor

Commit-type: feature, test

SeqDense treats ILU as LU allowing PC defaults to work when dense matrix
is not yet known

DMSHELL uses dense format if no format provided.

Fix manual pages for MatFactor

Commit-type: feature, testing-fix, documentation
/spend 1h

show more ...


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output/ex43_a.out
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/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/tests/ex1.c
/petsc/src/vec/vec/tests/ex100.cu
/petsc/src/vec/vec/tests/ex58.c
/petsc/src/vec/vec/tests/ex59.cxx
/petsc/src/vec/vec/tests/makefile
/petsc/src/vec/vec/tests/output/ex100_1.out
/petsc/src/vec/vec/tests/output/ex100_2.out
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/petsc/src/vec/vec/tests/output/ex59_1.out
/petsc/src/vec/vec/tests/output/ex59_2.out
a80e93e828-Aug-2020 Emil <emconsta@mcs.anl.gov>

modified description of ex25 to avoid IMEX confusion.


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/petsc/src/tao/leastsquares/tutorials/output/cs1_2.out
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/impls/implicit/theta/theta.c
ex25.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/seq/seqcuda/makefile
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/tests/ex51.c
/petsc/src/vec/vec/tests/makefile
/petsc/src/vec/vec/tests/output/ex51_1.out
/petsc/src/vec/vec/tests/output/ex51_2.out
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/impls/vscat.c
/petsc/src/vec/vscat/interface/vscatfce.c
ee30046326-Aug-2020 Satish Balay <balay@mcs.anl.gov>

doc: fix build errors


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/petsc/src/snes/tests/output/ex8_q3_dim-3_porder-4.out
/petsc/src/snes/tutorials/ex12.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/output/ex12_2d_p1_adaptmg_0.out
/petsc/src/snes/tutorials/output/ex12_2d_p1_adaptmg_1.out
/petsc/src/snes/tutorials/output/ex13_2d_p1_gmg_vcycle_adapt.out
/petsc/src/snes/tutorials/output/ex22_1_alt_3.out
/petsc/src/snes/utils/convest.c
/petsc/src/sys/dll/reg.c
/petsc/src/sys/error/fp.c
/petsc/src/sys/memory/mtr.c
/petsc/src/ts/adapt/interface/tsadapt.c
ex1.c
ex1f.F
ex20opt_ic.c
ex20opt_p.c
makefile
/petsc/src/vec/vec/tests/makefile
2da392cc17-Aug-2020 Barry Smith <bsmith@mcs.anl.gov>

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

Commit-type: portability-fix, testing-fix, style-fix, feature, maintainability
/spend 1.5h


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5ab1ac2b21-Aug-2020 Hong Zhang <hongzhang@anl.gov>

Fix docs for TS examples


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8d2c18ca05-Jul-2020 Mukkund Sunjii <mukkundsunjii@gmail.com>

Riemann solver added to ex11


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ex11.c
output/ex11_sw_hll.out
8cda795410-Aug-2020 Matthew G. Knepley <knepley@gmail.com>

DM: Nullspace constructor should report old and new field numbers


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