Merge branch 'barry/2025-09-04/deprecate-mpiu-bool' into 'main'

Deprecate MPIU_BOOL which used to be for PETSc's enum Bool but now is just MPI_C_BOOL

See merge request petsc/petsc!8691

Deprecate MPIU_BOOL which used to be for PETSc' enum Bool but now is just MPI_C_BOOL so no longer needs its own name

Merge branch 'MarDiehl/use-MPIU' into 'main'

MPIU wrappers provide better debugging capabilities

See merge request petsc/petsc!8696

better debugging capabilities

using MPIU wrappers where available and PetscCallMPI for all MPI(U)
functions

Merge branch 'MarDiehl/fix-typo' into 'main'

missing "s" for isascii and issundials

See merge request petsc/petsc!8559

missing "s" for isascii and issundials

Merge branch 'knepley/fix-plex-hdf5-compress' into 'main'

Plex+HDF5: Fix compression handling in HDF5 output

See merge request petsc/petsc!8317

Plex+HDF5: Fix compression handling in HDF5 output
- Add compress flag to HDF5 Viewer
- Add PetscViewerHDF5SetCompress() and PetscViewerHDF5GetCompress()
- Initialize IS compressOutput to PETSC_TRUE

Plex+HDF5: Fix compression handling in HDF5 output
- Add compress flag to HDF5 Viewer
- Add PetscViewerHDF5SetCompress() and PetscViewerHDF5GetCompress()
- Initialize IS compressOutput to PETSC_TRUE and check viewer flag as well
- Turn on viewer compression rather than flip IS flag in Plex output

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Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'knepley/fix-is-compression' into 'main'

IS+HDF5: Do not write compressed ISes unless we explicitly ask

See merge request petsc/petsc!7905

IS+HDF5: Do not write compressed ISes unless we explicitly ask
- DMPlex output version 3.1.0 compresses ISes
- Add ISGetCompressOutput() and ISSetCompressOutput()
- Add compressOutput flag to IS

Merge remote-tracking branch 'origin/release'

Merge branch 'knepley/fix-is-compress-default' into 'release'

IS: Change default for I/O compression to PETSC_FALSE

See merge request petsc/petsc!7932

IS: Change default for I/O compression to PETSC_FALSE

Merge branch 'knepley/feature-plex-hdf5-opt' into 'main'

IS+HDF5: Add run-length compression to IS I/O

See merge request petsc/petsc!7862

IS+HDF5: Add run-length compression for arithmetic progressions to IS I/O
- Add DMPlexGetDepthStratumGlobalSize()
- Add name and compression info to HDF5ReadCtx
- Add compression argument to PetscVie

IS+HDF5: Add run-length compression for arithmetic progressions to IS I/O
- Add DMPlexGetDepthStratumGlobalSize()
- Add name and compression info to HDF5ReadCtx
- Add compression argument to PetscViewerHDF5ReadSizes_Private() and PetscViewerHDF5Load_Internal()
- Gather compressed info to all procs when loading
- Set name for local coordinates
- Add logging
- Add -is_view_compress to turn off compression
- Add -dm_plex_view_coordinate_section to just output coordinates
- Add -dm_plex_view_labels to turn off label output
- Support loading coordinates without section

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Merge branch 'barry/2024-09-02/rebased-fix-conversion-warnings' into 'main'

Compiler finds (and forbid) casts from higher precision integers to lower

See merge request petsc/petsc!7806

Change from deprecated PETSC_MAX/MIN_INT to PETSC_INT_MAX/MIN

Commit-type: i.e. error-checking, optimization, bug-fix, portability-fix, testing-fix, style-fix, feature, documentation, example
Funded

Change from deprecated PETSC_MAX/MIN_INT to PETSC_INT_MAX/MIN

Commit-type: i.e. error-checking, optimization, bug-fix, portability-fix, testing-fix, style-fix, feature, documentation, example
Funded-by:
Project:
Time: hours
Reported-by:
Thanks-to:
Development Tools: Vim, Emacs, Eclipse

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Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in th

Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in the CI

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Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-11-26/docs-section-bounds/release' into 'release'

Add docs on bounds of some section function arguments

See merge request petsc/petsc!7058

Merge branch 'barry/2023-11-24/check-section-chart' into 'main'

Add PetscCheck() for some rstart <= rend

See merge request petsc/petsc!7050

Add a few PetscCheck() that function input arguments rstart and rend are non-decreasing

Add docs on bounds of some section function arguments