Merge branch 'master' of github.com:PHASTA/phasta

My incomplete work in the itrdrv.f cleanup seems to have lead to a long stint of broken svLS code but now it produces the same results it did prior to the cleanup e.g., ab5b07a458969128644e941ce150fa

My incomplete work in the itrdrv.f cleanup seems to have lead to a long stint of broken svLS code but now it produces the same results it did prior to the cleanup e.g., ab5b07a458969128644e941ce150fa049270fdf1 on March 13, 2016

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incompressible: fix build with svls solver and gcc5

Bug fixed when probes requested

Bug fixed with probes and xyzts.dat

compiles

it looks like a block of code was moved into the initEQS(...) fn but the variable declarations were left behind

try to fix compile errors

compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually

compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually works...same with other features that were moved to functions....somebody needs to follow this lead and do the same thing for compressible

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partial save of work towards cleanup when I realized I had uncommited stuff for LSPinning

phsolver: deallocated fncorp in compressible and incompressible itrdrv

phsolver: deallocated wnorm in compressible and incompressible itrdrv

bringing PETSc and svLS back to the master

Should now compile for individual or combined IC solvers. Note flag changes for CMake. Some cleanup of old native GMRes solver for compressible flow

make svLS disableable

intermediate forces.dat file was missing the last step until this move of call to forces.dat

Trying to confirm that stobjob merge is correct

Fixed some typos but doubt this is finished

working paralel svLS with scalars

Multiple scalar solves with svLS coded but only tested with 1 scalar

Working scalar solve with only one scalar

reasonably functional version of svLS solver that also links to leslib for comparison...note eps_outer hard coded to 40xeps_momentum_leslib as per svLS paper's suggestion

Added the flags to common and hardcoded them in itrdrv.f

first round of changes for svLS solve. still need to set flags to choose svLS branch...suggest hardcode for now, later port to input_fform, common.h and common_c.h

restore histor.dat output in IC

write_displ is a dead fn - replace its call with a stop stmt