History log of /honee/include/ (Results 101 – 125 of 155)
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e816a7e422-Jul-2024 James Wright <james@jameswright.xyz>

feat: Implement centralized storage of QData


/honee/examples/navierstokes.c
navierstokes.h
/honee/src/qdata.c
/honee/src/setupts.c
28160fc218-Jul-2024 James Wright <james@jameswright.xyz>

feat: Add jac_data_size_vol

- Allows non-Jacobian examples to not have to set zeros to it's inputs
- Removes the need for `uses_newtonian` (newtonian itself can not add
the extra term for IDL)


navierstokes.h
/honee/problems/advection.c
/honee/problems/eulervortex.c
/honee/problems/newtonian.c
/honee/problems/shocktube.c
/honee/qfunctions/advection.h
/honee/qfunctions/eulervortex.h
/honee/src/setuplibceed.c
8a02cd4c17-Jul-2024 James Wright <james@jameswright.xyz>

refactor: Replace dm_scale with meter


navierstokes.h
/honee/problems/advection.c
/honee/problems/eulervortex.c
/honee/problems/newtonian.c
/honee/problems/shocktube.c
/honee/src/setuplibceed.c
/honee/src/turb_spanstats.c
89de314217-Jul-2024 James Wright <james@jameswright.xyz>

refactor: Remove q_data_size* from ProblemData


navierstokes.h
/honee/src/setuplibceed.c
/honee/src/turb_spanstats.c
66d5474017-Jul-2024 James Wright <james@jameswright.xyz>

refactor: Remove `dim` from ProblemData

Should just grab that from the DM


navierstokes.h
/honee/problems/advection.c
/honee/problems/blasius.c
/honee/problems/densitycurrent.c
/honee/problems/eulervortex.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/shocktube.c
/honee/src/differential_filter.c
/honee/src/grid_anisotropy_tensor.c
/honee/src/misc.c
/honee/src/setuplibceed.c
/honee/src/smartsim/sgs_dd_training.c
/honee/src/strong_boundary_conditions.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
4cb09fdd12-Jul-2024 James Wright <james@jameswright.xyz>

refactor: Remove redundant comments from navierstokes.h

And newlines too


navierstokes.h
/honee/src/misc.c
/honee/src/setupts.c
e07531f712-Jul-2024 James Wright <james@jameswright.xyz>

refactor: More consistent naming of qf context


/honee/examples/navierstokes.c
navierstokes.h
/honee/problems/advection.c
/honee/problems/bc_freestream.c
/honee/problems/bc_slip.c
/honee/problems/blasius.c
/honee/problems/channel.c
/honee/problems/densitycurrent.c
/honee/problems/eulervortex.c
/honee/problems/gaussianwave.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/shocktube.c
/honee/problems/stg_shur14.c
/honee/problems/taylorgreen.c
/honee/src/differential_filter.c
/honee/src/setuplibceed.c
/honee/src/smartsim/sgs_dd_training.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
7ce151ad12-Jul-2024 James Wright <james@jameswright.xyz>

minor(file): Remove char array lengths from arguments

There's no need for these to be here. I put them there before I have a
good understanding of pointers and C in general


honee-file.h
/honee/qfunctions/advection.h
/honee/qfunctions/bc_slip.h
/honee/qfunctions/blasius.h
/honee/qfunctions/eulervortex.h
/honee/qfunctions/newtonian.h
/honee/qfunctions/shocktube.h
/honee/qfunctions/stg_shur14.h
/honee/src/honee-file.c
/honee/src/setupdm.c
/honee/src/turb_spanstats.c
5957207212-Jul-2024 James Wright <james@jameswright.xyz>

internal: Add HONEEOptionsSetValueDefault


navierstokes.h
/honee/src/misc.c
/honee/src/setupdm.c
db90dbaa12-Jul-2024 James Wright <james@jameswright.xyz>

refactor: Remove SetupICsFromBinary

- Only used once, might as well just directly call HoneeLoadBinaryVec


/honee/examples/navierstokes.c
navierstokes.h
/honee/src/misc.c
b237916a12-Jul-2024 James Wright <james@jameswright.xyz>

internal: Add HoneeWriteBinaryVec


honee-file.h
/honee/src/honee-file.c
/honee/src/setupts.c
360b37c912-Jul-2024 James Wright <james@jameswright.xyz>

internal: Remove comm argument from HoneeLoadBinaryVec


honee-file.h
/honee/src/honee-file.c
/honee/src/misc.c
c9ff4f0812-Jul-2024 James Wright <james@jameswright.xyz>

refactor: honee-file functions


honee-file.h
/honee/src/honee-file.c
/honee/src/misc.c
/honee/src/setupts.c
93ca29b612-Jul-2024 James Wright <james@jameswright.xyz>

internal: Add honee-file


/honee/README.md
honee-file.h
navierstokes.h
/honee/src/honee-file.c
/honee/src/misc.c
ae2b091f26-Jun-2024 James Wright <james@jameswright.xyz>

chore: Move to Apache-2.0 OR BSD-2-Clause


/honee/CHANGELOG.md
/honee/LICENSE-APACHE
/honee/LICENSE-BSD
/honee/common.mk
/honee/examples/conv_test.sh
/honee/examples/navierstokes.c
/honee/examples/stdoutParsing.py
bc_definition.h
log_events.h
mat-ceed-impl.h
mat-ceed.h
navierstokes.h
petsc-ceed-utils.h
petsc-ceed.h
petsc_ops.h
sgs_model_torch.h
smartsim.h
/honee/problems/advection.c
/honee/problems/bc_freestream.c
/honee/problems/bc_slip.c
/honee/problems/blasius.c
/honee/problems/channel.c
/honee/problems/densitycurrent.c
/honee/problems/eulervortex.c
/honee/problems/gaussianwave.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/sgs_model_torch_weak.c
/honee/problems/shocktube.c
/honee/problems/stg_shur14.c
/honee/problems/stg_shur14.h
/honee/problems/taylorgreen.c
/honee/problems/torch/sgs_model_torch.cpp
/honee/pytorch_pkgconfig.py
/honee/qfunctions/advection.h
/honee/qfunctions/advection_types.h
/honee/qfunctions/bc_freestream.h
/honee/qfunctions/bc_freestream_type.h
/honee/qfunctions/bc_slip.h
/honee/qfunctions/blasius.h
/honee/qfunctions/channel.h
/honee/qfunctions/densitycurrent.h
/honee/qfunctions/differential_filter.h
/honee/qfunctions/differential_filter_enums.h
/honee/qfunctions/eulervortex.h
/honee/qfunctions/gaussianwave.h
/honee/qfunctions/grid_anisotropy_tensor.h
/honee/qfunctions/inverse_multiplicity.h
/honee/qfunctions/mass.h
/honee/qfunctions/newtonian.h
/honee/qfunctions/newtonian_state.h
/honee/qfunctions/newtonian_types.h
/honee/qfunctions/riemann_solver.h
/honee/qfunctions/setupgeo.h
/honee/qfunctions/setupgeo2d.h
/honee/qfunctions/setupgeo_helpers.h
/honee/qfunctions/sgs_dd_model.h
/honee/qfunctions/sgs_dd_training.h
/honee/qfunctions/sgs_dd_utils.h
/honee/qfunctions/shocktube.h
/honee/qfunctions/stabilization.h
/honee/qfunctions/stabilization_types.h
/honee/qfunctions/stg_shur14.h
/honee/qfunctions/stg_shur14_type.h
/honee/qfunctions/strong_boundary_conditions.h
/honee/qfunctions/taylorgreen.h
/honee/qfunctions/turb_spanstats.h
/honee/qfunctions/turb_stats_types.h
/honee/qfunctions/utils.h
/honee/qfunctions/utils_eigensolver_jacobi.h
/honee/qfunctions/velocity_gradient_projection.h
/honee/src/bc_definition.c
/honee/src/boundary_condition.c
/honee/src/cloptions.c
/honee/src/differential_filter.c
/honee/src/dm_utils.c
/honee/src/grid_anisotropy_tensor.c
/honee/src/inverse_multiplicity.c
/honee/src/log_events.c
/honee/src/mat-ceed.c
/honee/src/misc.c
/honee/src/petsc_ops.c
/honee/src/qdata.c
/honee/src/setupdm.c
/honee/src/setuplibceed.c
/honee/src/setupts.c
/honee/src/smartsim/sgs_dd_training.c
/honee/src/smartsim/smartsim.c
/honee/src/smartsim_weak.c
/honee/src/strong_boundary_conditions.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
5f65e1a707-Jul-2024 James Wright <james@jameswright.xyz>

bc: Add and use DMLabelCreateGlobalValueArray


navierstokes.h
/honee/src/dm_utils.c
/honee/src/strong_boundary_conditions.c
21ba7ba421-Jun-2024 James Wright <james@jameswright.xyz>

bc: Implement 3D dXdx for strong STG

- Used for determining element size in STG calculation


navierstokes.h
/honee/problems/stg_shur14.c
/honee/qfunctions/stg_shur14.h
/honee/qfunctions/strong_boundary_conditions.h
/honee/src/dm_utils.c
/honee/src/strong_boundary_conditions.c
15c1561607-Jun-2024 James Wright <james@jameswright.xyz>

boundary: Add cell-to-face basis routines


/honee/.gitlab-ci.yml
/honee/examples/navierstokes.c
navierstokes.h
/honee/problems/advection.c
/honee/problems/blasius.c
/honee/problems/eulervortex.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/stg_shur14.c
/honee/qfunctions/utils.h
/honee/src/differential_filter.c
/honee/src/dm_utils.c
/honee/src/mat-ceed.c
/honee/src/misc.c
/honee/src/setuplibceed.c
/honee/src/strong_boundary_conditions.c
/honee/src/turb_spanstats.c
000d203201-Jul-2024 Jeremy L Thompson <jeremy@jeremylt.org>

matceed - sync Ratel and HONEE


/honee/doc/theory.md
/honee/examples/dd_sgs_data/OutScaling.dat
/honee/examples/dd_sgs_data/b1.dat
/honee/examples/dd_sgs_data/b2.dat
/honee/examples/dd_sgs_data/w1.dat
/honee/examples/dd_sgs_data/w2.dat
/honee/examples/navierstokes.c
/honee/examples/vortexshedding.yaml
mat-ceed.h
/honee/src/differential_filter.c
/honee/src/grid_anisotropy_tensor.c
/honee/src/mat-ceed.c
/honee/src/setuplibceed.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
149fb53628-Jun-2024 James Wright <james@jameswright.xyz>

chore: Move navierstokes.* out of root directory

navierstokes.h to include and navierstokes.c into examples


/honee/.gitignore
/honee/.gitlab-ci.yml
/honee/AUTHORS
/honee/CONTRIBUTING.md
/honee/Makefile
/honee/README.md
/honee/conf.py
/honee/doc/intro.md
/honee/doc/runtime_options.md
/honee/examples/STGInflow_blasius.dat
/honee/examples/STGRand.dat
/honee/examples/advection.yaml
/honee/examples/blasius.yaml
/honee/examples/channel.yaml
/honee/examples/conv_plot.py
/honee/examples/conv_test.sh
/honee/examples/gaussianwave.yaml
/honee/examples/meshes/Makefile
/honee/examples/meshes/cylinder.geo
/honee/examples/navierstokes.c
/honee/examples/postprocess/vortexshedding.py
/honee/examples/stdoutParsing.py
/honee/examples/vortexshedding.yaml
navierstokes.h
/honee/index.md
/honee/problems/advection.c
/honee/problems/bc_freestream.c
/honee/problems/bc_slip.c
/honee/problems/blasius.c
/honee/problems/channel.c
/honee/problems/densitycurrent.c
/honee/problems/eulervortex.c
/honee/problems/gaussianwave.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/shocktube.c
/honee/problems/stg_shur14.c
/honee/problems/stg_shur14.h
/honee/problems/taylorgreen.c
/honee/qfunctions/blasius.h
/honee/qfunctions/channel.h
/honee/qfunctions/densitycurrent.h
/honee/qfunctions/gaussianwave.h
/honee/qfunctions/newtonian.h
/honee/qfunctions/newtonian_state.h
/honee/qfunctions/taylorgreen.h
/honee/src/boundary_condition.c
/honee/src/cloptions.c
/honee/src/differential_filter.c
/honee/src/dm_utils.c
/honee/src/grid_anisotropy_tensor.c
/honee/src/inverse_multiplicity.c
/honee/src/misc.c
/honee/src/petsc_ops.c
/honee/src/qdata.c
/honee/src/setupdm.c
/honee/src/setuplibceed.c
/honee/src/setupts.c
/honee/src/smartsim/sgs_dd_training.c
/honee/src/smartsim/smartsim.c
/honee/src/smartsim_weak.c
/honee/src/strong_boundary_conditions.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
/honee/tests/blasius_stgtest.yaml
/honee/tests/junit.py
/honee/tests/smartsim_regression_framework.py
/honee/tests/stats_test.yaml
965d9f7425-Jun-2024 James Wright <james@jameswright.xyz>

doc: Get documentation running


/honee/.gitignore
/honee/.gitlab-ci.yml
/honee/.gitlab/issue_templates/bug_report.md
/honee/.gitlab/issue_templates/feature_request.md
/honee/.gitlab/merge_request_templates/default.md
/honee/CHANGELOG.md
/honee/CONTRIBUTING.md
/honee/Doxyfile
/honee/Makefile
/honee/README.md
/honee/common.mk
/honee/conf.py
/honee/doc/css/altair-plot.css
/honee/doc/references.bib
/honee/doc/requirements.txt
/honee/doc/runtime_options.md
/honee/doc/theory.md
petsc-ceed-utils.h
petsc-ceed.h
/honee/index.md
/honee/navierstokes.c
/honee/problems/advection.c
/honee/problems/bc_freestream.c
/honee/problems/blasius.c
/honee/problems/stg_shur14.c
/honee/qfunctions/bc_freestream.h
/honee/qfunctions/newtonian_state.h
/honee/qfunctions/riemann_solver.h
/honee/qfunctions/stg_shur14.h
/honee/qfunctions/stg_shur14_type.h
/honee/smartsim_regression_framework.py
/honee/src/mat-ceed.c
/honee/src/petsc_ops.c
/honee/src/qdata.c
/honee/tests/blasius_stgtest.yaml
/honee/tests/blasius_test.yaml
/honee/tests/createPyTorchModel/NNModel_HIT.pt
/honee/tests/createPyTorchModel/NNModel_HIT_fp64_jit.pt
/honee/tests/createPyTorchModel/README.md
/honee/tests/createPyTorchModel/update_weights.py
/honee/tests/junit-xml/.gitignore
/honee/tests/junit-xml/LICENSE.txt
/honee/tests/junit-xml/README.rst
/honee/tests/junit-xml/junit_xml/__init__.py
/honee/tests/junit.py
/honee/tests/junit_common.py
/honee/tests/output/blasius_stgtest.yaml
/honee/tests/output/blasius_test.yaml
/honee/tests/output/diff_filter_mms_y_spacing.dat
/honee/tests/output/fluids-navierstokes-adv-rotation-cosine.bin
/honee/tests/output/fluids-navierstokes-adv-rotation-implicit-stab-supg.bin
/honee/tests/output/fluids-navierstokes-adv-skew.bin
/honee/tests/output/fluids-navierstokes-adv-translation-implicit-stab-su.bin
/honee/tests/output/fluids-navierstokes-adv2d-rotation-explicit-stab-supg-consistent-mass.bin
/honee/tests/output/fluids-navierstokes-adv2d-rotation-explicit-strong.bin
/honee/tests/output/fluids-navierstokes-adv2d-rotation-implicit-stab-supg.bin
/honee/tests/output/fluids-navierstokes-blasius-bc_slip.bin
/honee/tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin
/honee/tests/output/fluids-navierstokes-blasius.bin
/honee/tests/output/fluids-navierstokes-blasius_STG.bin
/honee/tests/output/fluids-navierstokes-blasius_STG_strongBC.bin
/honee/tests/output/fluids-navierstokes-blasius_STG_weakT.bin
/honee/tests/output/fluids-navierstokes-blasius_diff_filter_aniso_vandriest.bin
/honee/tests/output/fluids-navierstokes-blasius_diff_filter_iso.bin
/honee/tests/output/fluids-navierstokes-channel-prim.bin
/honee/tests/output/fluids-navierstokes-channel.bin
/honee/tests/output/fluids-navierstokes-dc-explicit.bin
/honee/tests/output/fluids-navierstokes-dc-implicit-stab-none.bin
/honee/tests/output/fluids-navierstokes-euler-explicit.bin
/honee/tests/output/fluids-navierstokes-euler-implicit.bin
/honee/tests/output/fluids-navierstokes-gaussianwave-IDL-entropy.bin
/honee/tests/output/fluids-navierstokes-gaussianwave-IDL.bin
/honee/tests/output/fluids-navierstokes-gaussianwave-explicit.bin
/honee/tests/output/fluids-navierstokes-gaussianwave-shell.bin
/honee/tests/output/fluids-navierstokes-shocktube-explicit-su-yzb.bin
/honee/tests/output/fluids-navierstokes-taylor-green-IC.bin
/honee/tests/output/fluids-navierstokes-turb-spanstats-IC.bin
/honee/tests/output/fluids-navierstokes-turb-spanstats-stats.bin
/honee/tests/output/stats_test.yaml
/honee/tests/output/y00_output.npy
/honee/tests/output/y01_output.npy
/honee/tests/stats_test.yaml
bf1f5d6e18-Jun-2024 James Wright <james@jameswright.xyz>

Merge pull request #1110 from CEED/zach/entropy-variables

Add Entropy Variables to libCEED fluids NS mini-app


/honee/README.md
sgs_model_torch.h
/honee/navierstokes.c
/honee/navierstokes.h
/honee/problems/advection.c
/honee/problems/bc_freestream.c
/honee/problems/bc_slip.c
/honee/problems/eulervortex.c
/honee/problems/gaussianwave.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/shocktube.c
/honee/problems/stg_shur14.c
/honee/qfunctions/bc_freestream.h
/honee/qfunctions/bc_slip.h
/honee/qfunctions/blasius.h
/honee/qfunctions/channel.h
/honee/qfunctions/densitycurrent.h
/honee/qfunctions/differential_filter.h
/honee/qfunctions/gaussianwave.h
/honee/qfunctions/newtonian.h
/honee/qfunctions/newtonian_state.h
/honee/qfunctions/newtonian_types.h
/honee/qfunctions/sgs_dd_model.h
/honee/qfunctions/stg_shur14.h
/honee/qfunctions/taylorgreen.h
/honee/qfunctions/turb_spanstats.h
/honee/qfunctions/velocity_gradient_projection.h
/honee/src/differential_filter.c
/honee/src/misc.c
/honee/src/setupdm.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
/honee/tests-output/fluids-navierstokes-gaussianwave-IDL-entropy.bin
6dfcbb0518-Jun-2024 James Wright <james@jameswright.xyz>

fluids: Make commandline option arrays all upper case


/honee/Makefile
/honee/README.md
sgs_model_torch.h
/honee/index.md
/honee/navierstokes.c
/honee/navierstokes.h
/honee/problems/bc_freestream.c
/honee/problems/bc_slip.c
/honee/problems/gaussianwave.c
/honee/problems/newtonian.c
/honee/problems/sgs_dd_model.c
/honee/problems/stg_shur14.c
/honee/pytorch_pkgconfig.py
/honee/qfunctions/bc_freestream.h
/honee/qfunctions/bc_slip.h
/honee/qfunctions/blasius.h
/honee/qfunctions/channel.h
/honee/qfunctions/densitycurrent.h
/honee/qfunctions/differential_filter.h
/honee/qfunctions/gaussianwave.h
/honee/qfunctions/newtonian.h
/honee/qfunctions/newtonian_state.h
/honee/qfunctions/newtonian_types.h
/honee/qfunctions/sgs_dd_model.h
/honee/qfunctions/stg_shur14.h
/honee/qfunctions/taylorgreen.h
/honee/qfunctions/turb_spanstats.h
/honee/qfunctions/velocity_gradient_projection.h
/honee/src/differential_filter.c
/honee/src/setupdm.c
/honee/src/turb_spanstats.c
/honee/src/velocity_gradient_projection.c
/honee/tests-output/fluids-navierstokes-gaussianwave-IDL-entropy.bin
487a3b6e25-Apr-2024 James Wright <james@jameswright.xyz>

fluids: Create BCDefinition, use for essential BCs


/honee/Makefile
bc_definition.h
/honee/index.md
/honee/navierstokes.c
/honee/navierstokes.h
/honee/problems/sgs_dd_model.c
/honee/pytorch_pkgconfig.py
/honee/src/bc_definition.c
/honee/src/boundary_condition.c
/honee/src/cloptions.c
/honee/src/setupdm.c
b40a7e6311-May-2024 James Wright <james@jameswright.xyz>

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. Wh

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. While I was at it, I figured it'd be more clear to have a
separate log_events.c file as well to have the actual "storage" of the
PetscLogEvents and the RegisterLogEvents function itself.

show more ...


log_events.h
/honee/navierstokes.h
/honee/problems/sgs_dd_model.c
/honee/problems/torch/sgs_model_torch.cpp
/honee/src/log_events.c
/honee/src/misc.c

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