misc: Formatting and other minor fixes

matceed - mark mat for reassembly when QF data stale

matceed - drop extra header include

matceed - sync Ratel and HONEE

chore: Move navierstokes.* out of root directory

navierstokes.h to include and navierstokes.c into examples

fix: Correct format globbing to include all files

Lack of `'` around globs results in shell substitution before it's
passed to `git ls-files`

fix: Address GCC compiler warnings

- GCC was concerned that `q` in the STG code was being used
uninitialized
- GCC was also concerned that PetscViewerBinaryRead doesn't guarantee
that the value

fix: Address GCC compiler warnings

- GCC was concerned that `q` in the STG code was being used
uninitialized
- GCC was also concerned that PetscViewerBinaryRead doesn't guarantee
that the value is being set (which is always is...)

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tidy - small fixes

Merge pull request #1110 from CEED/zach/entropy-variables

Add Entropy Variables to libCEED fluids NS mini-app

fluids: Proliferate entropy variables, add test

Co-authored-by: Zach Atkins <zacharyjayhawk@gmail.com>

refactor(fluids): Rename some booleans

fluids: Create BCDefinition, use for essential BCs

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. Wh

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. While I was at it, I figured it'd be more clear to have a
separate log_events.c file as well to have the actual "storage" of the
PetscLogEvents and the RegisterLogEvents function itself.

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fluids: Add PyTorch external DD SGS evaluation

- Rename sequential_internal -> *_ceed

fix(fluids): Spanwise width miscalculated for statsitics

Merge pull request #1573 from CEED/jrwrigh/fix_fluids_printing

fluids: Correct printing of MatTypes

fluids: Print correct Mat Types

fluids: Add back CeedOperator PetscLogEvents

Remove the unused fluids-based ones in favor of the built-in MatCeed
ones

fix(fluids): Print info just before solving

fix(fluids): Add PCNONE to MatCeed solver selection

fluids: Demo MatCeed{Get,Set}ContextReal

fluids: Use new MatCeed/Ratel updates

fluids: Update MatCeed with Ratel updates

fluids: Add QDataGet functions

Merge pull request #1568 from CEED/jrwrigh/fix_blasius_state

fix: Correct P0 deprecation