Merge branch 'barry/2025-05-15/fix-func-typedef-names' into 'main'

All typedef for functions are of the form (XXXXFn)(...) not (*XXXXyyyy)(....)

See merge request petsc/petsc!8408

Fix PetscProbFunc

Merge remote-tracking branch 'origin/release'

Merge branch 'jolivet/fix-typos' into 'release'

Fix typos

See merge request petsc/petsc!8259

Fix typos

Merge branch 'barry/2024-04-29/add-fortran-enums' into 'main'

Major updates to Fortran interface

See merge request petsc/petsc!7517

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous ve

Fortran 90: fully embrace After 34 years!

- deprecate use of 'F90' in Fortran function names
- use Fortran pointers when appropriate
- the new Fortran API is not backward compatible with previous versions!
- also clean up inconsistent PETSc code detected by new Fortran generation tools
- drop use of bfort
- automatically generate all the Fortran PETSc objects, enums etc from the include files
- generate most of the Fortran interface definitions and functions from the source code
- simplify the number and organization of Fortran modules

Co-authored-by: Jose E. Roman <jroman@dsic.upv.es>

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Merge branch 'knepley/feature-swarm-remap' into 'main'

Swarm: Adding remapping

See merge request petsc/petsc!8059

Swarm: Move remapping into the library and changed Swarm setup
- I changed the meaning of DMSetUp() for Swarm. Now it sets up the fields and cell DMs, but not particles. This has to be true to allow

Swarm: Move remapping into the library and changed Swarm setup
- I changed the meaning of DMSetUp() for Swarm. Now it sets up the fields and cell DMs, but not particles. This has to be true to allow
user intervention in particle setup.
- Add DMSwarmRemapType, DMSwarmRemap(), and DMSwarmDuplicate()
- Add DMSwarmGetType()
- Add DMSwarmGetCellDMByName() and DMSwarmGetCellDMNames()

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Merge branch 'knepley/feature-swarm-remap' into 'main'

Knepley/feature swarm remap

See merge request petsc/petsc!8054

DSwarm: Add DMSwarmCellDM type
- Vectors can be created from several fields
- Each cell DM has a separate cellid field and sort context
- Mass matrix can now handle multiple fields
- Add DMSwarmCellD

DSwarm: Add DMSwarmCellDM type
- Vectors can be created from several fields
- Each cell DM has a separate cellid field and sort context
- Mass matrix can now handle multiple fields
- Add DMSwarmCellDMCreate(), DMSwarmCellDMDestroy(), DMSwarmCellDMView(), DMSwarmCellDMGetDM(), DMSwarmCellDMGetFields(), DMSwarmCellDMGetCoordinateFields(), DMSwarmCellDMGetCellID(), DMSwarmCellDMGetSort(), DMSwarmCellDMSetSort(), and DMSwarmCellDMGetBlockSize()
- Add DMSwarmAddCellDM(), DMSwarmSetCellDMActive(), and DMSwarmGetCellDMActive()
- Add DMSwarmCreateGlobalVectorFromFields(), DMSwarmDestroyGlobalVectorFromFields(), DMSwarmCreateLocalVectorFromFields(), and DMSwarmDestroyLocalVectorFromFields()
- Add DMSwarmSortDestroy()

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Merge branch 'knepley/feature-hamiltonian-ex2-opt' into 'main'

Fix Hamiltonian ex2 for Landau Damping

See merge request petsc/petsc!7937

DMSwarm: Allow multiple fields to define the DM field and multiple cellDM, allow different coordinate fields, and compute moments
- Changed interface for DMSwarmVectorDefineField() and DMSwarmVectorG

DMSwarm: Allow multiple fields to define the DM field and multiple cellDM, allow different coordinate fields, and compute moments
- Changed interface for DMSwarmVectorDefineField() and DMSwarmVectorGetField() to allow multiple fields
- Add DMSwarmReplace_Internal()
- Add coordinate name to Swarm
- Add DMSwarmGetCoordinateField() and DMSwarmSetCoordinateField()
- Add DMSwarmComputeMoments()
- In DMLocatePoints_Plex(), ignore extra coordinates in input vector
- Add CellDMInfo struct
- Add DMSwarmPushCellDM() and DMSwarmPopCellDM()

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DMSwarm: Add DMSwarmSortRestorePointsPerCell()
- Add debugging info to Swarm

Merge branch 'barry/2024-04-13/fix-sowing-strings' into 'main'

Update PETSc to use sowing bfort that handles string arguments and PETSC_NULL_INT

See merge request petsc/petsc!7480

Update source code removing all unneeded /*@C and associated manual stubs and interfaces

Merge branch 'knepley/fix-swarm-project-fv' into 'main'

DM: Fix Swarm projection for FV

See merge request petsc/petsc!7282

Swarm: Generalize projection to multiple components
- Generalize mass matrix to multiple components
- Add DMSwarmGetFieldInfo()
- Add DMSwarmVectorGetField()

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2024-01-04/fix-includes-man-pages/release' into 'release'

Barry/2024 01 04/fix includes man pages/release

See merge request petsc/petsc!7165

Fix manual page formating in include directory

Merge branch 'knepley/fix-swarm-layout' into 'main'

Swarm: Reworked Swarm projection interface and fixed some particle layout

See merge request petsc/petsc!6856

Swarm: Reworked Swarm projection interface
- Added scatter mode to DMSwarmProjectFields()
- Fixed internal interface to allow bi-directional projection

Merge branch 'jacobf/2023-08-17/header-guard-check' into 'main'

Check header guards

See merge request petsc/petsc!6822

Convert all header guards to pragma once