| #
84872906
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| 10-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-submesh-edge'
* knepley/fix-plex-submesh-edge:
DMPlex: Removed unused variable in refinement
DMPlex: Also mark hybrid cells with unsplit vertices
DMPlex: Docs fo
Merge branch 'knepley/fix-plex-submesh-edge'
* knepley/fix-plex-submesh-edge:
DMPlex: Removed unused variable in refinement
DMPlex: Also mark hybrid cells with unsplit vertices
DMPlex: Docs for preallocation
DMPlex: Fix for parallel refinement - PetscSF needs the leaves in sorted local order for it to get SFGather correct
DMPlex: Label hybrid cells with unsplit edges during submesh creation - I don't like this completely since we have to use -(cell number) to avoid aliasing vertices in the original mesh
DMPlex: Fixed submesh boundary in 3D - Correct support for unsplit edges - Correct support for hybrid faces from unsplit edges - Added checks
DMPlex: Now DMPlexCheclSymmetry() also checks multiple cone/support entries
DMPlex: Fix unsplit vertex support in submeshes - Assumed only a single split edge, which is true in 2D
DMPlex: Fixing marking of unsplit vertices - Check for presence in label was wrong (has to be exactly -1) - Check for incidence was wrong (was also getting unsplit marker)
show more ...
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| #
ba3c3d50
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| 07-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix for parallel refinement
- PetscSF needs the leaves in sorted local order for it to get SFGather correct
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| #
2389894b
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| 05-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Can now create a map from coarse to fine vertices
- This is currently necessary for FAS, which I think is wrong
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| #
ab15ae43
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| 03-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-fas
* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTransp
Merge branch 'master' into knepley/feature-plex-fas
* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTranspose: fix for lazy block size
mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option.
configure: add FC_DEFINE_FLAG to petscvariables
added a citation for pounders, Stefan finally came through
update to latest netcdf fixes bug that did not allow building on recent Mac OS X
DMPlex: Fixes for CGNS - Fixed loop bounds since CGNS uses closed intervals - Bug with mixed cell types - Typo with coordinates
final updates from nightly tests
fix for countcfunction
removed outdated docs and comments on MatStructure usage removed SAME_PRECONDITIONER since no longer used removed unneed use of MatStructure in Schur complement matrix
removed MatStructure arguments from Tao
fixes for Sundials and fun3d cannot use MPIU_SUM for integer arrays
inplace ILU factorization must update state of inplace matrix to prevent infinite recursion of updating PC
fixes for BDDC by the way not having BDDC always in the testing is going to lead to trouble
the compute Jacobian functions for SNES and TS now do not take a MatStructure flag
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner if the operator changed in the way that SAME_PRECONDITIONER did with KSPSetOperators()
tracks when Mat's have a change in nonzero structure this information can be used by PC to determine how preconditioners must be rebuilt currently only does an error check if the user said same nonzero pattern but actually changed the pattern
completed cleanup of removal of matrix pointers to compute jacobian routines
makefile: Added 'make includegraph' to create an inclusion dependency graph.
Contrib: Updated include-graph.sh script to ignore *.hh files
...
Conflicts:
src/dm/dt/interface/dt.c
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| #
bed052ea
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| 03-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added CellRefinerGet/RestoreAffineTransforms_Internal()
- This gives the mapping from a given cell to each subcell
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| #
061e9cde
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| 27-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merging master with feature-dmmoab. Only conflict was with SOURCECXX specification under impls/moab/makefile.
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| #
bf5b0b0b
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| 25-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
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| #
dcf28c8f
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| 23-Feb-2014 |
Jed Brown <jed@jedbrown.org> |
Merge branch 'jed/plex-Wmaybe-uninitialized'
* jed/plex-Wmaybe-uninitialized:
DMPlex: quash more -Wmaybe-uninitialized
DMPlex: quash -Wmaybe-uninitialized
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| #
020631bc
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| 19-Feb-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
Conflicts:
include/petscsnesfas.h
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| #
2a5d0125
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| 18-Feb-2014 |
Jed Brown <jed@jedbrown.org> |
DMPlex: quash -Wmaybe-uninitialized
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| #
e630791c
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| 15-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
93b9b957
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| 15-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-refine-sf'
* knepley/fix-plex-refine-sf:
SF: Added additional checking
DMPlex: Fixed SF created during refinement - Remote edge had wrong starting point - Forgot a
Merge branch 'knepley/fix-plex-refine-sf'
* knepley/fix-plex-refine-sf:
SF: Added additional checking
DMPlex: Fixed SF created during refinement - Remote edge had wrong starting point - Forgot an entry for hybrid edge
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| #
1f1b5a69
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| 15-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/ts-rhsjacobian-only
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| #
6d808a57
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| 13-Feb-2014 |
Shri Abhyankar <abhyshr@mcs.anl.gov> |
Merge branch 'shri/update-SuiteSparse' into shri/external-package-KLU
Conflicts:
conf/test
config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py
config/examples/arch-linux-pkgs-opt.py
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| #
7d5cd7d5
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| 08-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed SF created during refinement
- Remote edge had wrong starting point
- Forgot an entry for hybrid edge
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| #
bab9b9ec
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| 07-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into balay/tao-to-petsc
Conflicts:
src/dm/examples/tests/ex42.c
src/dm/examples/tutorials/ex65dm.c
src/ksp/ksp/examples/tutorials/ex42.c
src/snes/examples/tutorials/cahn-hi
Merge branch 'master' into balay/tao-to-petsc
Conflicts:
src/dm/examples/tests/ex42.c
src/dm/examples/tutorials/ex65dm.c
src/ksp/ksp/examples/tutorials/ex42.c
src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c
src/snes/examples/tutorials/ex54.c
src/snes/examples/tutorials/ex55.c
src/snes/examples/tutorials/ex60.c
src/snes/examples/tutorials/ex61.c
src/snes/examples/tutorials/ex63.c
src/snes/examples/tutorials/ex633d_db.c
src/snes/examples/tutorials/ex64.c
src/snes/examples/tutorials/ex65.c
src/snes/examples/tutorials/ex653d.c
src/ts/examples/tutorials/ex23.c
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| #
81906ebd
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| 04-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-hybrid-tet-refinement'
* knepley/fix-hybrid-tet-refinement:
DMPlex ex4: Fixed test output for hybrid tet refinement
DMPlex: Fix for 3d hybrid simplicial refinement - Fi
Merge branch 'knepley/fix-hybrid-tet-refinement'
* knepley/fix-hybrid-tet-refinement:
DMPlex ex4: Fixed test output for hybrid tet refinement
DMPlex: Fix for 3d hybrid simplicial refinement - Fixed the order in which hybrid faces are attached to the cell
DMPlex: Fix hybrid 2d simplex refinement - If hybrid end face is inverted, flip the new hybrid cells created - Fix supports for this flip
DMPlex ex4: Added test for hybrid quads
DMPlex: Added in hybrid quad refinement - Strange merge in the middle for some reason
DMPlex: Cleanup and fix for SF construction in refinement - Had wrong numbering for vertices in quads
DMPlex: Bug fix for hybrid tet refinement - The new edges for hybrid faces do not depend on the cap face orientation - This happens because we are not attaching hybrid faces in an order dependent on the cap face orientation. Maybe we should.
DMPlex: Bug fix for hybrid tet refinement - The orientation that we get for hybrid faces depends on both the edge and face orientation - This happens because we are not attaching hybrid faces in an order dependent on the cap face orientation. Maybe we should.
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| #
3b61eb6d
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| 02-Feb-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix for 3d hybrid simplicial refinement
- Fixed the order in which hybrid faces are attached to the cell
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| #
ea00e70e
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| 31-Jan-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix hybrid 2d simplex refinement
- If hybrid end face is inverted, flip the new hybrid cells created
- Fix supports for this flip
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| #
036f3cb5
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| 26-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into balay/tao-to-petsc
Conflicts:
include/makefile
|
| #
f9cfb505
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| 26-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into knepley/feature-mat-zerorowscols-baij
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| #
c7ff62de
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| 13-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-dif
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
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| #
52d48256
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| 10-Jan-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
|
| #
a97b51b8
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| 08-Jan-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added in hybrid quad refinement
- Strange merge in the middle for some reason
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| #
149f48fd
|
| 08-Jan-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Cleanup and fix for SF construction in refinement
- Had wrong numbering for vertices in quads
|