interface - OpenGrok history log for /petsc/src/dm/interface

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
2a546c9d	27-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'master' into knepley/feature-pc-patch * master: (107 commits) cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for Merge branch 'master' into knepley/feature-pc-patch * master: (107 commits) cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for DrMemory which may serve as an alternative to valgrind on Windows Finish Gail's copyedits for developers manual. openmpi: fix namespace conflict [with static build on ppc64le] two pages of Gail's edits to developers guide Another chapter of Gail's copyedits for the developers guide Gail's copyedits on two more chapters of the developers guide Fix more %d to %D in GAMG code. Fix code style in GAMG code DMPlexVTK: vertices is int! need to use %d instead of %D TS ex18: update outputs (reported by nightly tests) Use %D in error messages for GAMG hash; fix style issues with GAMG hash config: Update petsc4py git commit Fix bad plain extern declaration. Add Gail's copyedits for the initial portion of the developers guide Add missing common block to subroutine fix mpiuni tests with xl compilers Copy & paste the change on PetscSparseDensePlusDot Fix a wrong macro PetscInfo: Add missing errorchecking Log: various fixes and cleanups ... 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85928a98	27-Jun-2018	Stefano Zampini <stefano.zampini@gmail.com>	Restore Push/Pop model for ASCII viewers /petsc/.gitignore /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/args.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/MatlabEngine.py 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/petsc/src/snes/interface/noise/snesnoise.c /petsc/src/snes/interface/snes.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/sys/classes/draw/impls/x/xcolor.c /petsc/src/sys/classes/random/examples/tutorials/ex2.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/sys/classes/viewer/impls/socket/matlab/makefile /petsc/src/sys/classes/viewer/interface/viewa.c /petsc/src/sys/error/ftn-custom/zerrf.c /petsc/src/sys/examples/tests/ex1f.F90 /petsc/src/sys/f90-mod/petsclog.h /petsc/src/sys/f90-mod/petscsys.h90 /petsc/src/sys/f90-mod/petscsysmod.F /petsc/src/sys/f90-src/f90_cwrap.c /petsc/src/sys/logging/examples/tutorials/ex1f.F90 /petsc/src/sys/logging/examples/tutorials/makefile /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/logging/xmllogevent.h /petsc/src/sys/logging/xmlviewer.h /petsc/src/sys/mpiuni/mpi.c /petsc/src/sys/objects/destroy.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/ftn-custom/zstrf.c /petsc/src/sys/utils/str.c /petsc/src/tao/examples/tutorials/ex3.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c /petsc/src/tao/linesearch/interface/taolinesearch.c /petsc/src/ts/examples/tutorials/ex21.c /petsc/src/ts/examples/tutorials/extchem.py /petsc/src/ts/examples/tutorials/output/ex21_1.out /petsc/src/ts/examples/tutorials/power_grid/ex3sa.c /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_3.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/interface/ftn-custom/ztsf.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tssen.c /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/is/is/utils/iscoloring.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/vec/examples/tutorials/ex1f.F90 /petsc/src/vec/vec/examples/tutorials/ex21.c /petsc/src/vec/vec/examples/tutorials/makefile /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/interface/f90-custom/zvectorf90.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vscat/impls/vpscat.h /petsc/src/vec/vscat/impls/vpscat_mpi1.h /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/dlregisvecscat.c /petsc/systems/Apple/OSX/bin/makedmg /petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example.xcodeproj/project.pbxproj /petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example/PETSc cocoa example-Info.plist /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj /petsc/systems/Apple/iOS/bin/iosbuilder.py /petsc/systems/Apple/iOS/bin/makedmg
a2817cca	26-Jun-2018	Stefano Zampini <stefano.zampini@gmail.com>	Merge branch 'stefano_zampini/feature-simplex2tensor-refinement-hybrid-master' /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/PETSc/Configure.py /petsc/gmakefile.test /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/pcgamgimpl.h /petsc/include/petscdmplex.h /petsc/share/petsc/datafiles/meshes/hybrid_tetwedge.msh /petsc/share/petsc/datafiles/meshes/hybrid_triquad.msh /petsc/share/petsc/datafiles/meshes/surfacesphere_bin.msh /petsc/src/dm/examples/tutorials/ex11f90.F90 /petsc/src/dm/impls/plex/examples/tests/ex1.c /petsc/src/dm/impls/plex/examples/tests/ex4.c /petsc/src/dm/impls/plex/examples/tests/output/ex1_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_5.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t_parallel.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_per.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_wedge.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_10.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_11.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_13_hybs2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext_s2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_s2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_vtk.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded_s2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_s2t.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_9.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_1.out /petsc/src/dm/impls/plex/glexg.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexexodusii.c /petsc/src/dm/impls/plex/plexgenerate.c /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/impls/plex/plexvtu.c dm.c /petsc/src/docs/tex/manual/ArgonneReportTemplate.doc /petsc/src/docs/tex/manual/ArgonneReportTemplateLastPage.pdf /petsc/src/docs/tex/manual/ArgonneReportTemplatePage2.pdf /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/faq.html /petsc/src/ksp/ksp/examples/tutorials/ex44f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex6f.F90 /petsc/src/ksp/pc/impls/gamg/agg.c /petsc/src/ksp/pc/impls/gamg/classical.c /petsc/src/ksp/pc/impls/gamg/geo.c /petsc/src/ksp/pc/impls/gamg/util.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c /petsc/src/sys/objects/ftn-custom/zstart.c /petsc/src/sys/objects/options.c /petsc/src/sys/utils/str.c /petsc/src/ts/examples/tutorials/output/ex18_adv_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out /petsc/src/vec/vec/examples/tutorials/ex21.c
994fe344	22-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	PetscInfo: Add missing errorchecking dm.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/factor/ilu/ilu.c /petsc/src/ksp/pc/impls/telescope/telescope.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/blockmat/seq/blockmat.c /petsc/src/mat/impls/sell/seq/sell.c /petsc/src/sys/utils/mpitr.c /petsc/src/ts/characteristic/interface/characteristic.c /petsc/src/vec/vscat/impls/vpscat.c /petsc/src/vec/vscat/impls/vpscat_mpi1.c
fa2bb9fe	15-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	Log: various fixes and cleanups - Reorganize declarations in petsclog.h - Better -log_exclude, now applies to all registered stages - Minor fixes to implementation of -info_exclude - PCASM: Log appl Log: various fixes and cleanups - Reorganize declarations in petsclog.h - Better -log_exclude, now applies to all registered stages - Minor fixes to implementation of -info_exclude - PCASM: Log apply-on-blocks KSP solves - Rename PetscLogDestroy() -> PetscLogFinalize() and hide it from the API show more ... /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscdmtypes.h /petsc/include/petsclog.h /petsc/include/petscsys.h /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/confignightly/cg2 /petsc/lib/petsc/bin/maint/confignightly/si /petsc/lib/petsc/bin/maint/confignightly/si2 /petsc/lib/petsc/bin/maint/confignightly/si3 /petsc/lib/petsc/bin/maint/startnightly /petsc/lib/petsc/bin/petsclogformat.py /petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c /petsc/src/dm/impls/plex/plexdistribute.c dlregisdmdm.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/manual/part1.tex /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/download/index.html /petsc/src/docs/website/index.html /petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c /petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c /petsc/src/ksp/ksp/interface/dlregisksp.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/ksp/pc/impls/is/nn/nn.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/mat/examples/tutorials/ex15.c /petsc/src/mat/examples/tutorials/output/ex15_3.out /petsc/src/mat/examples/tutorials/output/ex15_4.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_1.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_2.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_3.out /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/impls/mffd/ftn-custom/zmffdf.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/partition/impls/party/party.c /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/impls/fas/fasfunc.c /petsc/src/snes/interface/dlregissnes.c /petsc/src/sys/classes/draw/interface/draw.c /petsc/src/sys/classes/random/interface/dlregisrand.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/classes/viewer/interface/view.c /petsc/src/sys/info/verboseinfo.c /petsc/src/sys/logging/ftn-custom/zplogf.c /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/eventlog.c /petsc/src/sys/logging/utils/stagelog.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/str.c /petsc/src/tao/interface/dlregistao.c /petsc/src/ts/characteristic/interface/slregis.c /petsc/src/ts/interface/dlregists.c /petsc/src/ts/trajectory/impls/memory/trajmemory.c /petsc/src/vec/is/ao/interface/dlregisdm.c /petsc/src/vec/is/sf/interface/dlregissf.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/comb.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/dlregisvecscat.c /petsc/src/vec/vscat/interface/vscreate.c
7d5acc75	17-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: error if trying to set the hybrid bounds when the dimension has not been specified yet - the "dim" stratum should be created during DMPlexStratify - hybrid bounds can be set before stratific DMPlex: error if trying to set the hybrid bounds when the dimension has not been specified yet - the "dim" stratum should be created during DMPlexStratify - hybrid bounds can be set before stratification - skip "dim" label during DMCopyLabels - If the plex has all hybrid cells, DMPlexGetStratumIS will return a NULL is show more ... /petsc/src/dm/impls/plex/plex.c dm.c
96173672	17-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DM: default dimension should be negative /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscdmtypes.h /petsc/include/petsclog.h /petsc/include/petscsys.h /petsc/lib/petsc/bin/maint/startnightly /petsc/lib/petsc/bin/petsclogformat.py /petsc/src/dm/impls/plex/plexdistribute.c dm.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/manual/part1.tex /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/index.html /petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c /petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/pc/impls/is/nn/nn.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/mat/examples/tutorials/ex15.c /petsc/src/mat/examples/tutorials/output/ex15_3.out /petsc/src/mat/examples/tutorials/output/ex15_4.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_1.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_2.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_3.out /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/partition/impls/party/party.c /petsc/src/snes/impls/fas/fas.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/eventlog.c /petsc/src/sys/logging/utils/stagelog.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/pinit.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/comb.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/impls/vscat.c
65694654	14-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	DMPlex: Rename a couple events for the sake of consistency /petsc/lib/petsc/bin/petsclogformat.py dlregisdmdm.c
67eb269b	14-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	DMPlex: Partition event should belong to DM class /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/fftw.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/sharedLibraries.py /petsc/config/configure.py /petsc/config/gmakegentest.py /petsc/config/install.py /petsc/include/petsc/mpiuni/mpif.h /petsc/include/petsc/private/dmforestimpl.h /petsc/include/petsc/private/dmlabelimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/hashmap.h /petsc/include/petsc/private/hashmapi.h /petsc/include/petsc/private/hashmapij.h /petsc/include/petsc/private/hashset.h /petsc/include/petsc/private/hashseti.h 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2cf2a403	11-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'master' into knepley/feature-pc-patch * master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing Merge branch 'master' into knepley/feature-pc-patch * master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ... Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c show more ... /petsc/.gitignore /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/Matlab.py 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/petsc/src/vec/vscat/impls/vpscat.h /petsc/src/vec/vscat/impls/vpscat_mpi1.c /petsc/src/vec/vscat/impls/vpscat_mpi1.h /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/vscreate.c /petsc/systems/Apple/OSX/bin/makedmg /petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example.xcodeproj/project.pbxproj /petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example/PETSc cocoa example-Info.plist /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj /petsc/systems/Apple/iOS/bin/makedmg
497880ca	21-May-2018	Richard Tran Mills <rmills@rmills.org>	Change #if(n)def to #if (!)defined in all DM code. Commit-type: style-fix /petsc/.gitignore /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/config/utilities/debuggers.py /petsc/config/PETSc/options/sharedLibraries.py /petsc/config/examples/arch-linux-gcc-cxx-avx2.py /petsc/config/examples/arch-linux-pkgs-valgrind.py /petsc/config/examples/arch-mswin-gnu.py /petsc/config/examples/arch-viennacl.py /petsc/gmakefile /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/private/characteristicimpl.h /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/dmpleximpl.h 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955860a3	04-May-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/fix-plex-residual-loop' * knepley/fix-plex-residual-loop: Plex+SNES: Protect Destroy Plex+SNES/TS: Moved zeroing of Jacobian out of DMPlexComputeJacobian_Internal() - Shoul Merge branch 'knepley/fix-plex-residual-loop' * knepley/fix-plex-residual-loop: Plex+SNES: Protect Destroy Plex+SNES/TS: Moved zeroing of Jacobian out of DMPlexComputeJacobian_Internal() - Should probably go in DMLocal versions, but now its in the top-level Plex FEM versions SNES+Plex: Needed cell offset, not cell number Sys: Added a check for gnome-terminal, which never uses -display - Added some docs Plex: Made a public interface for ComputeBdResidualSingle() Plex: The first argument to a pointfunc should be the coordinate dimension show more ... /petsc/config/BuildSystem/config/packages/make.py /petsc/gmakefile /petsc/include/petsc/finclude/petscdmplex.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petscdmda.h /petsc/include/petscdmplex.h /petsc/include/petscsnes.h /petsc/lib/petsc/bin/maint/runhtml.py /petsc/src/dm/f90-mod/makefile /petsc/src/dm/f90-mod/petscdmmod.F /petsc/src/dm/f90-mod/petscdmplexmod.F /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/plex/examples/tests/ex25.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexproject.c dm.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/snes/utils/dmplexsnes.c /petsc/src/snes/utils/f90-custom/zdmplexsnesf90.c /petsc/src/sys/error/adebug.c /petsc/src/sys/examples/tests/ex1f.F90 /petsc/src/sys/fileio/mprint.c /petsc/src/ts/examples/tutorials/network/wash/pipe.h /petsc/src/ts/examples/tutorials/network/wash/pipes1.c /petsc/src/ts/examples/tutorials/network/wash/wash.h /petsc/src/ts/utils/dmplexts.c
c4e6da2c	02-May-2018	Barry Smith <bsmith@mcs.anl.gov>	missing CHKERRQ() Commit-type: bug-fix Reported-by: clang static analyzer /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/combblas.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/libraryOptions.py /petsc/gmakefile.test /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petsc/private/taoimpl.h /petsc/include/petscdmda.h /petsc/include/petscerror.h /petsc/include/petscmat.h /petsc/include/petscsys.h /petsc/include/petsctao.h /petsc/include/petscversion.h /petsc/lib/petsc/conf/rules /petsc/lib/petsc/conf/test /petsc/lib/petsc/conf/variables /petsc/makefile /petsc/src/dm/dt/examples/tests/makefile /petsc/src/dm/examples/tests/makefile /petsc/src/dm/examples/tutorials/makefile /petsc/src/dm/field/examples/tutorials/makefile 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4b5b0a90	25-Apr-2018	Barry Smith <bsmith@mcs.anl.gov>	DMPlex and DMNetwork should not need to know about DMDA Commit-type: style-fix Development Tools: Vim, Emacs, Eclipse /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/BuildSystem/docs/manual.xml /petsc/config/BuildSystem/help.py /petsc/config/BuildSystem/retrieval.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/options/petscdir.py /petsc/config/PETSc/petsc.py /petsc/config/configure.py /petsc/include/petsc/private/dmdaimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscmath.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/include/petscviewer.h /petsc/lib/petsc/bin/maint/runhtml.py 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95452b02	16-Apr-2018	Patrick Sanan <patrick.sanan@gmail.com>	Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( -name ".c" -or -name ".h" -or -name ".cxx" \) \| xargs gsed -i 's/Notes\s:\s\(\w.\)/Notes:\n \1/' This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/ show more ... /petsc/include/petsc/private/petscimpl.h /petsc/include/petscdmtypes.h /petsc/include/petscdraw.h /petsc/include/petscerror.h /petsc/include/petscgll.h /petsc/include/petscis.h /petsc/include/petscksp.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscmatcoarsen.h /petsc/include/petscmath.h /petsc/include/petscoptions.h /petsc/include/petscpctypes.h /petsc/include/petscsf.h /petsc/include/petscsnes.h /petsc/include/petscsys.h /petsc/include/petsctao.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/da.c 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/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/aij/seq/bas/spbas.c /petsc/src/mat/impls/aij/seq/inode.c /petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c /petsc/src/mat/impls/aij/seq/superlu/superlu.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/baij/seq/baijfact2.c /petsc/src/mat/impls/baij/seq/baijfact3.c /petsc/src/mat/impls/baij/seq/baijfact81.c /petsc/src/mat/impls/blockmat/seq/blockmat.c /petsc/src/mat/impls/composite/mcomposite.c /petsc/src/mat/impls/hypre/mhypre.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/impls/maij/maij.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/mffd/mffddef.c 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9044fa66	14-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'master' into knepley/fix-plex-residual-loop Warning: This merge includes real changes * master: (188 commits) Add JuMP citation Copyedits and updates to developers manual Add mor Merge branch 'master' into knepley/fix-plex-residual-loop Warning: This merge includes real changes * master: (188 commits) Add JuMP citation Copyedits and updates to developers manual Add more protection to intrinsics MPI: protect arguments in MPI macros Add the missing conditionals for 64-bit build Plex+VTK: Fix field type determination Fix bug in name cleanup Bib: Added ref Plex+VTK: Fix field type determination Plex: Updated test output - I am now hating this shit forgot to save file after moving prototypes to petscsys.h update Apple example project settings per Xcode Two functions should actually be public, used, for example from Apple MacOS and iOS programs includes should always be included relative to include directory Apple removed old locations of docsets SNES ex12: Updated test output SNES ex62: Set name of solution vector - Update test output revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3 ... 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534d39fe	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/tisaac/feature-dmfield' * origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: Merge remote-tracking branch 'origin/tisaac/feature-dmfield' * origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: silence static analyzer warning PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM DMField: default initialization of variable PetscFE: fix integration for openCL PetscFEGeomComplete(): correct normal vector in 2D. DMField: c++/complex fixes DMField: empty processor protections DMField regression test fixes DMLabel: try to keep stride IS as stride IS as much as possible DMPlexRefine(): create depth before hybrid-bounded label DMField: documentation of interface DMField: implement shell DMPlex: rename newly created label ... 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/petsc/src/sys/classes/random/impls/sprng/sprng.c /petsc/src/tao/examples/tutorials/ex1.c /petsc/src/tao/examples/tutorials/ex2.c /petsc/src/tao/examples/tutorials/ex3.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/examples/tutorials/ex45.c /petsc/src/ts/examples/tutorials/ex46.c /petsc/src/ts/examples/tutorials/ex47.c /petsc/src/ts/examples/tutorials/ex48.c /petsc/src/ts/examples/tutorials/output/ex18_adv_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out /petsc/src/ts/utils/dmplexts.c /petsc/src/vec/is/utils/vsectionis.c
e429e28d	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/knepley/fix-dm-gmg' * origin/knepley/fix-dm-gmg: Plex+SNES: Fixed test output after naming vectors in solver loop DM: Improved viewing DM: DMCreateSubDM() Merge remote-tracking branch 'origin/knepley/fix-dm-gmg' * origin/knepley/fix-dm-gmg: Plex+SNES: Fixed test output after naming vectors in solver loop DM: Improved viewing DM: DMCreateSubDM() should propagate the coarse mesh and DS properly PetscDS: Dammit, these missed the other ChangeSet PetscDS: Added flag for turning off Jacobian preconditioned - Added PetscDSUseJacobianPreconditioner PetscDS: Fix viewing with a quadrature DS: Fixes for ASCII viewer PetscDS: Updated copy functions - Added PetscDSSelectEquations() which only copies a subset for a subDM - Added PetscDSCopyConstants() - Added docs DM: Allow outputting residual/solution vectors at SNES iterates easily - I now think ViewFromOptions is way easier than monitors DM: Do not allow a locked vector to be restored show more ... /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/args.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/MatlabEngine.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PARTY.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/Random123.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py 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e4bc0d72	08-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'master' into knepley/feature-pc-patch * master: (440 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings fix grep us Merge branch 'master' into knepley/feature-pc-patch * master: (440 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings fix grep usage on solaris [use egrep] opensolaris: fix errors Update timer reporting and minor reporting fix Remove redundant if statement. Found by @jedbrown Fixed problem with order of developer photos on website. superlu_dist: use correct flag in example [PETSC_HAVE_SUPERLU -> PETSC_HAVE_SUPERLU_DIST] Bib: PERMON ref fix for osx doc: more author fixes doc: more author fixes Italicized "orderings" in MPI process placement discussion. Added Richard to the user manual author list. Added Richard to the list of active developers on the website. add string check for MS-MPI and IMPI timeout errors opensolaris does not have multiple grep utils - but default one does not support -F. So use fgrep instead Standardizing timeout checks Report wall clock time of total tests Use time instead of date %s ... Conflicts: include/petscpc.h src/ksp/ksp/interface/itfunc.c show more ... /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/args.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/MatlabEngine.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PARTY.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py 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0a50eb56	08-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	DM: Finish up nullspace constructors - This should move to DS I think /petsc/include/petsc/finclude/petscpc.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/pcpatchimpl.h /petsc/include/petscconvest.h /petsc/include/petscdm.h /petsc/include/petscpc.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c dm.c /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/patch/pcpatch.c /petsc/src/snes/examples/tutorials/ex13.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_conv.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_gmg_vanka_mult.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_add.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_add_unity.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_mult.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_mult_conv.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_mult_unity.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_p1_conv.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_conv.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_add.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_add_unity.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_mult.out /petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_mult_unity.out /petsc/src/snes/examples/tutorials/output/ex62_2d_tri_p2_p1_conv.out /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/convest.c /petsc/src/snes/utils/dmplexsnes.c
e87a4003	04-Apr-2018	Barry Smith <bsmith@mcs.anl.gov>	Deprecate DMSet/GetDefaultSection() for DMSet/GetSection() Revert manual page change per Matt's preference Commit-type: style-fix Thanks-to: Matthew Knepley /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petscdm.h /petsc/src/dm/examples/tutorials/ex20.c /petsc/src/dm/examples/tutorials/ex21.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/da/dalocal.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/forest/p4est/pforest.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/plex/examples/tests/ex10.c /petsc/src/dm/impls/plex/examples/tests/ex11.c /petsc/src/dm/impls/plex/examples/tests/ex15.c /petsc/src/dm/impls/plex/examples/tests/ex19.c /petsc/src/dm/impls/plex/examples/tests/ex26.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/ex9.c /petsc/src/dm/impls/plex/examples/tutorials/ex1.c /petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90 /petsc/src/dm/impls/plex/examples/tutorials/ex6.c /petsc/src/dm/impls/plex/examples/tutorials/ex7.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexadapt.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexglvis.c /petsc/src/dm/impls/plex/plexhdf5.c /petsc/src/dm/impls/plex/plexindices.c /petsc/src/dm/impls/plex/plexnatural.c /petsc/src/dm/impls/plex/plexpartition.c /petsc/src/dm/impls/plex/plexpoint.c /petsc/src/dm/impls/plex/plexpreallocate.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/impls/plex/plexreorder.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/impls/swarm/swarm.c dm.c dmi.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/snes/examples/tutorials/ex13.c /petsc/src/snes/examples/tutorials/ex56.c /petsc/src/snes/examples/tutorials/ex69.c /petsc/src/snes/examples/tutorials/ex77.c /petsc/src/snes/interface/snesut.c /petsc/src/snes/utils/dmadapt.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/tao/examples/tutorials/ex3.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex11_sa.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/impls/mimex/mimex.c
4f50b82c	02-Apr-2018	Satish Balay <balay@mcs.anl.gov>	fix unused variable warnings dm.c
8f1509bc	01-Apr-2018	Barry Smith <bsmith@mcs.anl.gov>	Added DMSet/GetISColoringType() and cleaned up related manual pages slightly Commit-type: feature, documentation Development Tools: Vim, Emacs, Eclipse /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Zoltan.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/med.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/PETSc/options/libraryOptions.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/config/examples/arch-linux-knl.py /petsc/config/petsc_harness.sh /petsc/config/testparse.py /petsc/include/petsc/finclude/petscvec.h /petsc/include/petsc/private/dmnetworkimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscdm.h /petsc/include/petscdmnetwork.h /petsc/include/petscsnes.h /petsc/include/petscsys.h /petsc/include/petscvec.h /petsc/lib/petsc/conf/test /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/network/networkcreate.c /petsc/src/dm/impls/plex/examples/tests/ex26.c /petsc/src/dm/impls/plex/generators/ctetgen/makefile /petsc/src/dm/impls/plex/generators/makefile /petsc/src/dm/impls/plex/generators/tetgen/makefile /petsc/src/dm/impls/plex/generators/triangle/makefile /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexply.c dm.c /petsc/src/dm/label/makefile /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tests/benchmarkscatters/makefile /petsc/src/ksp/ksp/examples/tests/ex56.c /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/examples/tests/output/ex49_1_alt.out /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/network/ex1.c /petsc/src/ksp/ksp/examples/tutorials/network/ex1_nest.c /petsc/src/ksp/ksp/examples/tutorials/network/ex2.c /petsc/src/ksp/ksp/examples/tutorials/network/makefile /petsc/src/ksp/ksp/guess/makefile /petsc/src/ksp/pc/impls/composite/composite.c /petsc/src/mat/examples/tests/ex134.c /petsc/src/mat/examples/tests/ex135.c /petsc/src/mat/examples/tests/ex93.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/impls/aij/mpi/mmaij.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/hypre/makefile /petsc/src/mat/impls/hypre/mhypre.c /petsc/src/mat/impls/sbaij/seq/relax.h /petsc/src/mat/impls/sell/seq/sell.c /petsc/src/snes/examples/tutorials/network/ex1.c /petsc/src/snes/examples/tutorials/network/ex1options /petsc/src/snes/examples/tutorials/network/makefile /petsc/src/snes/examples/tutorials/network/output/ex1.out /petsc/src/snes/examples/tutorials/network/output/ex1_2.out /petsc/src/snes/examples/tutorials/network/power/PFReadData.c /petsc/src/snes/examples/tutorials/network/power/case9.m /petsc/src/snes/examples/tutorials/network/power/makefile /petsc/src/snes/examples/tutorials/network/power/output/power2_1.out /petsc/src/snes/examples/tutorials/network/power/output/power_1.out /petsc/src/snes/examples/tutorials/network/power/pffunctions.c /petsc/src/snes/examples/tutorials/network/power/power.c /petsc/src/snes/examples/tutorials/network/power/power.h /petsc/src/snes/examples/tutorials/network/power/power2.c /petsc/src/snes/examples/tutorials/network/power/poweroptions /petsc/src/snes/examples/tutorials/network/water/makefile /petsc/src/snes/examples/tutorials/network/water/output/water.out /petsc/src/snes/examples/tutorials/network/water/sample1.inp /petsc/src/snes/examples/tutorials/network/water/water.c /petsc/src/snes/examples/tutorials/network/water/water.h /petsc/src/snes/examples/tutorials/network/water/waterfunctions.c /petsc/src/snes/examples/tutorials/network/water/wateroptions /petsc/src/snes/examples/tutorials/network/water/waterreaddata.c /petsc/src/snes/impls/makefile /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesregi.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/examples/tests/ex32.c /petsc/src/sys/utils/mpitr.c /petsc/src/sys/webclient/examples/makefile /petsc/src/sys/webclient/examples/tutorials/makefile /petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/ts/examples/tutorials/network/wash/pipes1.c /petsc/src/ts/examples/tutorials/network/wash/wash.h /petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_6.out /petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_6.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /petsc/src/ts/trajectory/impls/basic/makefile 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/petsc/src/vec/vscat/examples/makefile /petsc/src/vec/vscat/examples/output/ex1_1.out /petsc/src/vec/vscat/examples/output/ex1_2.out /petsc/src/vec/vscat/examples/output/ex1_3.out /petsc/src/vec/vscat/examples/output/ex2_1.out /petsc/src/vec/vscat/examples/output/ex2_2.out /petsc/src/vec/vscat/examples/output/ex2_5.out /petsc/src/vec/vscat/examples/output/ex3_1.out /petsc/src/vec/vscat/examples/output/ex3_3.out /petsc/src/vec/vscat/examples/output/ex3_5.out /petsc/src/vec/vscat/impls/makefile /petsc/src/vec/vscat/impls/vpscat.c /petsc/src/vec/vscat/impls/vpscat.h /petsc/src/vec/vscat/impls/vpscat_mpi1.c /petsc/src/vec/vscat/impls/vpscat_mpi1.h /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/dlregisvecscat.c /petsc/src/vec/vscat/interface/makefile /petsc/src/vec/vscat/interface/vscreate.c /petsc/src/vec/vscat/makefile
8e81d068	30-Mar-2018	Lisandro Dalcin <dalcinl@gmail.com>	Consistent handling of command line options -info_exclude and -log_exclude /petsc/config/PETSc/Regression.py /petsc/config/report_tests.py /petsc/include/petscsys.h /petsc/lib/petsc/conf/bfort-petsc.txt /petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c dlregisdmdm.c /petsc/src/ksp/ksp/interface/dlregisksp.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/interface/dlregismat.c /petsc/src/snes/interface/dlregissnes.c /petsc/src/sys/classes/draw/interface/draw.c /petsc/src/sys/classes/random/interface/dlregisrand.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/classes/viewer/interface/view.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/str.c /petsc/src/tao/interface/dlregistao.c /petsc/src/ts/characteristic/interface/slregis.c /petsc/src/ts/interface/dlregists.c /petsc/src/vec/is/ao/interface/dlregisdm.c /petsc/src/vec/is/sf/interface/dlregissf.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/dlregisvec.c
e5893ccc	30-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	Doc: Improve documentation for debugging options /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/arch.py /petsc/config/PETSc/options/installDir.py /petsc/config/configure.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda-single.py /petsc/config/install.py /petsc/config/testparse.py /petsc/include/petsc/private/isimpl.h /petsc/include/petsc/private/pcpatchimpl.h /petsc/include/petscis.h /petsc/include/petscpc.h /petsc/include/petscpctypes.h /petsc/include/petsctao.h /petsc/lib/petsc/bin/maint/buildconfigtest /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/findvisibleprivatefunctions 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