MATNORMALHERMITIAN: use a more consistent naming for internal functions
Enable support for bjacobi when solving least-squares problems via LSQR
remove garbage from makefilesIncluding * unused FLAGS variables * All: lib that did not work * stray blank lines etcCommit-type: housekeeping/spend 1h
Merge branch 'psanan/docs-sphinx-man-pages' into 'main'Integrate Man Pages into Sphinx DocsCloses #1132 and #1015See merge request petsc/petsc!4989
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (wor
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (word.rstrip(","), comma)def _process_stripped_line(line): return " ".join(map(_process_word, line.split()))start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")def process_file(filename_full): with fileinput.FileInput(filename_full, inplace=True) as f: in_block = False for line in f: line_stripped = line.strip() # end ".seealso blocks" on a blank line or C-style comment close line_modified = None if not line_stripped: in_block = False elif line_stripped.endswith("*/"): in_block = False else: match = re.match(start_pattern, line) # not stripped line if match: indent = " " * len(match.group(1)) in_block = True line_modified = match.group( 1) + _process_stripped_line( match.group(2).strip()) elif in_block: line_modified = indent + _process_stripped_line( line_stripped) if line_modified: print(line_modified) # prints to the file else: print(line, end="") # prints to the fileBASE_DIRS = ["src", "include"]EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]def main(): """ Process everything """ for base in BASE_DIRS: for root, dirs, files in os.walk(base): for filename in files: if os.path.splitext(filename)[1] in EXT: filename_full = os.path.join(root, filename) print("FILE ---", filename_full) process_file(filename_full) for exclude_dir in EXCLUDE_DIRS: if exclude_dir in dirs: dirs.remove(exclude_dir)if __name__ == "__main__": main()```
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Remove the rest of the PetscCheckFalse() from the mat directoryCommit-type: housekeeping/spend 45m
Remove some PetscCheckFalse()
Merge branch 'barry/2022-03-30/strip-petscall-petsctrymethod' into 'main'Do not wrap PetscTryMethod() PetscUseMethod() in PetscCallSee merge request petsc/petsc!5051
Fix mpiu_allreduce to always return PetscErrorCodes, never MPI error codesBoth for debug and optimized buildsAlso removes shadow declaration errors from use of mpiu_allreduceCommit-type: error-
Fix mpiu_allreduce to always return PetscErrorCodes, never MPI error codesBoth for debug and optimized buildsAlso removes shadow declaration errors from use of mpiu_allreduceCommit-type: error-checkingReported-by: Lisandro Dalcin <dalcinl@gmail.com>
Do not wrap PetscTryMethod() PetscUseMethod() in PetscCallIt produces shadow declarations and also serves no purpose since these macros do the appropriate error checking alreadyThere may be addit
Do not wrap PetscTryMethod() PetscUseMethod() in PetscCallIt produces shadow declarations and also serves no purpose since these macros do the appropriate error checking alreadyThere may be additions needed for running with a static error checkerCommit-type: error-checking/spend 15mReported-by:Lisandro Dalcin <dalcinl@gmail.com>
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX() -> PetscCallThrow()- CHKERRCXX() -> PetscCallCXX()- CHKERRCUDA() -> PetscCallCUDA()- CHKERRCUBLAS() -> PetscCallCUBLAS()- CHKERRCUSPARSE() -> PetscCallCUSPARSE()- CHKERRCUSOLVER() -> PetscCallCUSOLVER()- CHKERRCUFFT() -> PetscCallCUFFT()- CHKERRCURAND() -> PetscCallCURAND()- CHKERRHIP() -> PetscCallHIP()- CHKERRHIPBLAS() -> PetscCallHIPBLAS()- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()- CHKERRQ_CEED() -> PetscCallCEED()- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()- CHKERRMKL() -> PetscCallMKL()- CHKERRMMG() -> PetscCallMMG()- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()- CHKERRCGNS() -> PetscCallCGNS()- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()- CHKERRSTR() -> PetscCallSTR()- CHKERRTC() -> PetscCallTC()
pluck ~1000 low hanging PetscCheckFalse() -> PetscCheck() fruit
chkerr and friends wrapped
rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()
add PetscAssert() and PetscAssertFalse()
PCQR for MATNORMALHERMITIAN
Make initialization of MatNormalHermitian similar to MatNormal
MATNORMAL: new operations
Merge remote-tracking branch 'origin/release'
Small improvements to KSPLSQR and MAT[H]NORMAL
All MPIU_ functions except MPIU_File return MPI error codes for checkingUpdate checkbadSource to find use of CHKERRQ with MPIU_ functionsCommit-type: i.e. error-checking, optimization, bug-fix, p
All MPIU_ functions except MPIU_File return MPI error codes for checkingUpdate checkbadSource to find use of CHKERRQ with MPIU_ functionsCommit-type: i.e. error-checking, optimization, bug-fix, portability-fix, testing-fix, style-fix, feature, documentation, exampleFunded-by:Project:Time: hoursReported-by:Thanks-to:Development Tools: Vim, Emacs, Eclipse
MatCreateNormal: propagate default vec type
Single petscdir.mk
build: add more support for not needing to set PETSC_DIR yet build with PETSc, also support for GNU make to directly use "make test" instead of "make -f gmakefile.test"Still needs -include ../petsc
build: add more support for not needing to set PETSC_DIR yet build with PETSc, also support for GNU make to directly use "make test" instead of "make -f gmakefile.test"Still needs -include ../petscdir.mk in many of the makefilesStill needs the link for ../petscdir.mk in many directoriesGNUMakefile: call legacy makefile recursively instead of including itGNUMakefile: promote default "all" target; "libs" builds libpetsc*GNUMakefile: If gnumake < 4.2 prefer makefile wrapper interface over direct gmakefile interface to avoid the following warningsgmakefile.test:92: arch-ci-linux-cxx-cmplx-pkgs-64idx/tests/testfiles: No such file or directorygmakefile:67: arch-ci-linux-cxx-cmplx-pkgs-64idx/lib/petsc/conf/files: No such file or directoryCommit-type: testing-fix, feature, usabilityThanks-to: Jed Brown jed@jedbrown.org
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new formsReplace a couple multi-mallocs with a single mallocReplace backwards loops in MatSetValues_*()
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new formsReplace a couple multi-mallocs with a single mallocReplace backwards loops in MatSetValues_*() with PetscArraymove()Commit-type: style-fix, feature
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