Build fixes

Hg-commit: 309c8cd1fe5e4ce4ea99ad84b3f2428573b73b07

fixing the explicit part of ARKIMEX 1BEE

Hg-commit: 57c9c77a465d7e04ca92774da068b65997d3bee6

adding some DAE support for ARKIMEX

Hg-commit: 256198a468020c644cd320c50eb2917156a7fa3a

don't list unneeded /*I includes; they clutter the manual pages

Hg-commit: e78ba20ae96445858089a43bccd0933d14f8ae95

Fixed some interaction of TS and NASM; added ARKIMEX hooks

Hg-commit: 46fb3263efc9f6b9fa4e937ff275cb4802148c14

Minor doc fix for TSTHETA

Hg-commit: c6efebc337cc59328807cfe6c7be05b88f874b1c

fixed rest of mising CHKERRQ() fixed a few unused but set variables

Hg-commit: 4acc0881334451e4d784ba0aa3b37fae2f983d1f

modified coefficients for ARK2D IMEX TS scheme

Hg-commit: 338b0c1f004c2de99de237a8b2429bc39b322fbc

removed trailing spaces from all files

Hg-commit: 1cfa55059afe46c5145e0e830cd797b97216abfb

removed all incorrect spaces before CHKERR...

Hg-commit: 653d9985c7cfe8fed21a37081a5b64f5e24e6c17

Added time-step adaptivity for the theta method. It's currently switched off by default
till the error estimation is fixed.

Hg-commit: 6fc333fb77ae6ce6c276a2f0b67f9b35e29d88e7

Commit after merge.

Hg-commit: a128a87f5736ccbab37df5d559616f8376f7026e

commit after merge

Hg-commit: 76831309032f5585424cb3e5e4c7f8f754699d5d

My first TS restart just 8 million other changes needed PETSc!
TSGetAdapt() changed to TSGetTSAdapt() because it gets a TSAdapt object, not an Adapt object
added TSAdapt binary view and load

Hg-comm

My first TS restart just 8 million other changes needed PETSc!
TSGetAdapt() changed to TSGetTSAdapt() because it gets a TSAdapt object, not an Adapt object
added TSAdapt binary view and load

Hg-commit: c5ab7de6c480df2d7b84dc349ac7871cdc85dcbe

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doc fix for TSBEULER

Hg-commit: 55c59199ebd6a5d9d6cfc1f961514d50e24c07e8

Changed ts_exact_final_time from boolean to enum.
TSAdapt can now modify the final time step to stop exactly at
the given final time.

Hg-commit: 2bbe8e4fc9d649fbb4ec4bc19259912d0788d4c2

Added support for subdomain SNES solves under TS

Hg-commit: f4fead50da1dbe8cf5ab910236516251b254ac31

fixed naming of KSPDM, SNESDM, TSDM and child objects, fixed DMXXYYYContextZZZ() to DMGet/CopyDMXXX()

Hg-commit: a8931f032682db8d679ab51da5c3819b9c32b632

TSSolve() did not properly handle null u argument
more work on TSView() binary and TSLoad()

Hg-commit: 85c2341b3eb28d6cdaa697c3b1e99963abb9edbf

Factor ts->time_step out of "shift" field and switch -ts_monitor_sp_eig

TS implementations should not store the entire shift internally, and
instead should use ts->time_step directly. TSMonitorSPEig

Factor ts->time_step out of "shift" field and switch -ts_monitor_sp_eig

TS implementations should not store the entire shift internally, and
instead should use ts->time_step directly. TSMonitorSPEig() computes the
"steady-state" Jacobian by manipulating ts->time_step before calling
SNESComputeJacobian().

Hg-commit: 28c7df5560d100a222655100368151915451540f

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SNESTSFormJacobian_ARKIMEX() always passed imex of true, now pass ark->imex
fixed bug that ARKIMEX didn't work for fully implicit because of above

Hg-commit: 4d3f2a85abbbbf18fa09dfab2dc3da9d18abb322

added TSComputeLinearStability() for Euler and theta, use it in graphics
cleaned up formating in rosw and arkimex files

Hg-commit: 553e2c2ebaaa83a3a28c43188c2ab6f232784856

reemove OBJSC and OBJSF from invididual makefiles and auto-define in conf/variables

Hg-commit: 2f01c17f3c19dc4b89aaf306cfd60a12312c270d

TSView_ARKIMEX calls TSAdaptView because it uses it

Hg-commit: 9701272c5717d287ba7d247b02dea12f42210311

TSView() calls TSAdaptView() for Rosw

Hg-commit: c2ac2edba4e196dd423c4a3387c3087b8469aeaf