utils - OpenGrok history log for /petsc/src/ts/utils

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
c4d4a4f8	06-May-2015	Matthew G. Knepley <knepley@gmail.com>	Plex: Now DMPlexComputeResidual_Internal() explicitly takes [cStart, cEnd) /petsc/bin/petscmpiexec /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/pthread.py /petsc/config/PETSc/options/arch.py /petsc/config/builder.py /petsc/config/builder2.py /petsc/include/petsc.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/pcgamgimpl.h /petsc/include/petsc/private/taoimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petscerror.h /petsc/include/petscksp.h /petsc/include/petscpc.h /petsc/include/petscsnes.h /petsc/include/petscsys.h /petsc/include/petsctao.h /petsc/include/petscts.h /petsc/include/petscviewerhdf5.h /petsc/lib/petsc/conf/bfort-petsc.txt /petsc/lib/petsc/conf/test /petsc/src/dm/examples/tutorials/ex9.c /petsc/src/dm/examples/tutorials/makefile /petsc/src/dm/impls/da/dagetarray.c /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/da/grvtk.c /petsc/src/dm/impls/plex/examples/tests/ex4.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/interface/dmget.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/faq.html /petsc/src/docs/website/documentation/installation.html /petsc/src/ksp/ksp/examples/tutorials/ex54f.F /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex56_0.out /petsc/src/ksp/ksp/impls/cg/cg.c /petsc/src/ksp/ksp/impls/cg/cgeig.c /petsc/src/ksp/ksp/impls/cg/cgimpl.h /petsc/src/ksp/ksp/impls/cg/cgne/cgne.c /petsc/src/ksp/ksp/impls/fcg/fcg.c /petsc/src/ksp/ksp/impls/fcg/fcgimpl.h /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/bicgstabcusp/bicgstabcusp.cu /petsc/src/ksp/pc/impls/gamg/agg.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/impls/hypre/hypre.c /petsc/src/ksp/pc/impls/sacusp/sacusp.cu /petsc/src/ksp/pc/impls/sacusp/sacusppoly.cu /petsc/src/mat/examples/tests/ex190.c /petsc/src/mat/examples/tests/ex191.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/examples/tests/output/ex191_1.out /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/nest/ftn-custom/zmatnestf.c /petsc/src/mat/impls/nest/matnest.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/ex5.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex5_2.out /petsc/src/snes/examples/tutorials/output/ex5_3.out /petsc/src/snes/examples/tutorials/output/ex5_4.out /petsc/src/snes/examples/tutorials/output/ex9_7.out /petsc/src/snes/examples/tutorials/output/ex9_8.out /petsc/src/snes/examples/tutorials/output/ex9_9.out /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/impls/gs/snesgs.c /petsc/src/snes/impls/ksponly/ksponly.c /petsc/src/snes/impls/ls/ls.c /petsc/src/snes/impls/ms/ms.c /petsc/src/snes/impls/multiblock/multiblock.c /petsc/src/snes/impls/nasm/nasm.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/impls/ngmres/anderson.c /petsc/src/snes/impls/ngmres/snesngmres.c /petsc/src/snes/impls/qn/qn.c /petsc/src/snes/impls/richardson/snesrichardson.c /petsc/src/snes/impls/tr/tr.c /petsc/src/snes/impls/vi/vi.c /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/sys/classes/draw/impls/win32/win32draw.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/dll/reg.c /petsc/src/sys/error/checkptr.c /petsc/src/sys/error/fp.c /petsc/src/sys/error/pstack.c /petsc/src/sys/logging/plog.c /petsc/src/sys/makefile /petsc/src/sys/memory/mal.c /petsc/src/sys/memory/mtr.c /petsc/src/sys/objects/ftn-custom/zstart.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/objects/subcomm.c /petsc/src/sys/objects/tagm.c /petsc/src/tao/bound/impls/blmvm/blmvm.c /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/bound/impls/gpcg/gpcg.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/impls/asls/asfls.c /petsc/src/tao/complementarity/impls/asls/asils.c /petsc/src/tao/complementarity/impls/ssls/ssfls.c /petsc/src/tao/complementarity/impls/ssls/ssils.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/pde_constrained/impls/lcl/lcl.c /petsc/src/tao/unconstrained/impls/bmrm/bmrm.c /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/tao/unconstrained/impls/neldermead/neldermead.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/tao/unconstrained/impls/owlqn/owlqn.c /petsc/src/ts/examples/tutorials/ex10.c /petsc/src/ts/examples/tutorials/ex16adj.c /petsc/src/ts/examples/tutorials/ex16opt_ic.c /petsc/src/ts/examples/tutorials/ex16opt_p.c /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20opt_ic.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/ex22.c /petsc/src/ts/examples/tutorials/ex9.c /petsc/src/ts/examples/tutorials/extchem.c /petsc/src/ts/examples/tutorials/extchemfield.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/power_grid/ex3adj.c /petsc/src/ts/examples/tutorials/power_grid/ex3adj_events.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt_fd.c /petsc/src/ts/examples/tutorials/power_grid/ex5.c /petsc/src/ts/examples/tutorials/power_grid/ex9.c /petsc/src/ts/examples/tutorials/power_grid/ex9adj.c /petsc/src/ts/examples/tutorials/power_grid/ex9opt.c /petsc/src/ts/examples/tutorials/power_grid/makefile /petsc/src/ts/examples/tutorials/power_grid/output/ex3adj_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex3opt_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex3opt_fd_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex9_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex9adj_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busadj.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt_fd.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/makefile /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busopt_1.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busopt_fd_1.out /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/interface/ts.c dmplexts.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/vec/examples/tests/ex47.c /petsc/src/vec/vec/examples/tests/makefile /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec1.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/bvec3.c /petsc/src/vec/vec/impls/seq/dvec2.c /petsc/src/vec/vec/impls/seq/seqcusp/cuspvecimpl.h /petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu /petsc/src/vec/vec/utils/vecio.c
73107ff1	15-Apr-2015	Lisandro Dalcin <dalcinl@gmail.com>	PetscHeaderCreate: Shorten argument list and optimize memory allocation * Remove type arguments from the macro * Use a single memory allocation call instead of three /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/generatefortranstubs.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/include/petsc/private/petscimpl.h /petsc/include/petscerror.h /petsc/include/petscis.h /petsc/include/petscoptions.h /petsc/include/petscsys.h /petsc/src/benchmarks/streams/MPIVersion.c /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/examples/tutorials/ex13f90.F90 /petsc/src/dm/examples/tutorials/makefile /petsc/src/dm/impls/da/da2.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/patch/patchcreate.c /petsc/src/dm/impls/plex/f90-custom/zplexf90.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/dm/impls/plex/plexindices.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/impls/plex/plexorient.c /petsc/src/dm/impls/plex/plexpartition.c /petsc/src/dm/impls/plex/plexreorder.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tutorials/ex2.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/impls/fcg/fcg.c /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/ksp/interface/dmksp.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/pc/impls/bddc/bddcfetidp.c /petsc/src/ksp/pc/impls/bddc/bddcnullspace.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c /petsc/src/ksp/pc/impls/gamg/classical.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/impls/gasm/gasm.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/coarsen/coarsen.c /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/examples/tests/ex117.c /petsc/src/mat/examples/tests/ex45.c /petsc/src/mat/impls/aij/seq/bas/spbas_cholesky.h /petsc/src/mat/impls/baij/mpi/baijov.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/nest/matnest.c /petsc/src/mat/interface/matnull.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/matfd/fdmatrix.c /petsc/src/mat/partition/partition.c /petsc/src/mat/utils/gcreate.c /petsc/src/snes/examples/tutorials/ex48.c /petsc/src/snes/examples/tutorials/ex73f90t.F90 /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/impls/nasm/aspin.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj.c /petsc/src/snes/interface/snesob.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/snes/utils/dmsnes.c /petsc/src/snes/utils/f90-custom/zdmplexsnesf90.c /petsc/src/sys/classes/bag/bag.c /petsc/src/sys/classes/draw/interface/dmarker.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/draw/utils/axisc.c /petsc/src/sys/classes/draw/utils/bars.c /petsc/src/sys/classes/draw/utils/dscatter.c /petsc/src/sys/classes/draw/utils/hists.c /petsc/src/sys/classes/draw/utils/lgc.c /petsc/src/sys/classes/matlabengine/matlab.c /petsc/src/sys/classes/random/interface/randomc.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/fileio/sysio.c /petsc/src/sys/ftn-custom/zutils.c /petsc/src/sys/logging/plog.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/subcomm.c /petsc/src/sys/utils/ftn-custom/zpbarrierf.c /petsc/src/sys/utils/str.c /petsc/src/sys/webclient/box.c /petsc/src/sys/webclient/google.c /petsc/src/tao/bound/impls/blmvm/blmvm.c /petsc/src/tao/bound/impls/gpcg/gpcg.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/bound/utils/isutil.c /petsc/src/tao/complementarity/impls/asls/asfls.c /petsc/src/tao/complementarity/impls/asls/asils.c /petsc/src/tao/complementarity/impls/ssls/ssfls.c /petsc/src/tao/complementarity/impls/ssls/ssils.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/linesearch/impls/morethuente/morethuente.c /petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c /petsc/src/tao/linesearch/interface/taolinesearch.c /petsc/src/tao/matrix/lmvmmat.c /petsc/src/tao/matrix/submatfree.c /petsc/src/tao/pde_constrained/impls/lcl/lcl.c /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/neldermead/neldermead.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/ts/adapt/interface/tsadapt.c /petsc/src/ts/characteristic/interface/characteristic.c /petsc/src/ts/event/tsevent.c /petsc/src/ts/examples/tutorials/ex14.c /petsc/src/ts/impls/eimex/eimex.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/implicit/gl/gladapt.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tscreate.c /petsc/src/ts/trajectory/interface/traj.c dmts.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/impls/mapping/ftn-custom/zaomappingf.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/is/is/interface/isreg.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/veccreate.c /petsc/src/vec/vec/utils/vscat.c
af0996ce	11-Apr-2015	Barry Smith <bsmith@mcs.anl.gov>	updated PETSc directory layout to match standard packaging strategies include/petsc finclude,private,mpiuni lib/petsc conf bin/petsc* /petsc/bin/PetscBinaryIO.py /petsc/bin/PetscBinaryIO_tests.py /petsc/bin/configVars.py /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/generateetags.py /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/generators/matlab.py /petsc/bin/maint/submitPatch.py /petsc/bin/maint/toclapack.sh /petsc/bin/maint/xclude /petsc/bin/mpiexec.sshsync /petsc/bin/petsc_conf.py /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petsclogformat.py /petsc/bin/petscmpiexec /petsc/bin/petscnagupgrade.py /petsc/bin/portabilitycheck.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/fblaslapack.py /petsc/config/BuildSystem/config/packages/mpi4py.py /petsc/config/BuildSystem/config/packages/netcdf.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/installDir.py /petsc/config/PETSc/petsc.py /petsc/config/builder.py /petsc/config/cmakeboot.py /petsc/config/cmakegen.py /petsc/config/configure.py /petsc/config/gmakegen.py /petsc/config/install.py /petsc/gmakefile /petsc/include/makefile /petsc/include/petsc/finclude/ftn-custom/makefile /petsc/include/petsc/finclude/ftn-custom/petscdm.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmcomposite.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmda.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmhide.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmplex.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmplexdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmredundant.h90 /petsc/include/petsc/finclude/ftn-custom/petscdmshell.h90 /petsc/include/petsc/finclude/ftn-custom/petscdt.h90 /petsc/include/petsc/finclude/ftn-custom/petscdtdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscdthide.h90 /petsc/include/petsc/finclude/ftn-custom/petscis.h90 /petsc/include/petsc/finclude/ftn-custom/petscisdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscishide.h90 /petsc/include/petsc/finclude/ftn-custom/petscksp.h90 /petsc/include/petsc/finclude/ftn-custom/petsckspdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscksphide.h90 /petsc/include/petsc/finclude/ftn-custom/petscmat.h90 /petsc/include/petsc/finclude/ftn-custom/petscmatdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscmathide.h90 /petsc/include/petsc/finclude/ftn-custom/petscpc.h90 /petsc/include/petsc/finclude/ftn-custom/petscpcdef.h90 /petsc/include/petsc/finclude/ftn-custom/petscpchide.h90 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060da220	06-Apr-2015	Matthew G. Knepley <knepley@gmail.com>	Viewer: Now ViewerRead() takes an extra argument to return the number of items read - An error is thrown for insufficient data unless the extra argument is non-NULL /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/PETSc/options/indexTypes.py /petsc/config/builder.py /petsc/config/builder2.py /petsc/config/configure.py /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petsc-private/drawimpl.h /petsc/include/petsc-private/viewerimpl.h /petsc/include/petscbag.h /petsc/include/petscdmplex.h /petsc/include/petscdraw.h /petsc/include/petscdrawtypes.h /petsc/include/petscksp.h /petsc/include/petscmath.h /petsc/include/petscts.h /petsc/include/petscviewer.h /petsc/share/petsc/datafiles/meshes/Rect-tri3.exo /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/plex/examples/tests/ex3.c 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f8e4bde8	27-Mar-2015	Matthew G. Knepley <knepley@gmail.com>	Viewer: PetscViewerRead() should return the number of items actually read - This also applies to all its implementations /petsc/bin/maint/checkBuilds.py /petsc/include/petsc-private/viewerimpl.h /petsc/include/petscviewer.h /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/plexfluent.c /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/petsc.bib /petsc/src/ksp/ksp/examples/tutorials/ex43.c /petsc/src/ksp/ksp/examples/tutorials/ex49.c /petsc/src/ksp/ksp/examples/tutorials/ex59.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/pc/impls/pbjacobi/pbjacobi.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/examples/tests/ex99.c /petsc/src/snes/examples/tutorials/ex5.c /petsc/src/snes/examples/tutorials/ex7.c /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmdasnes.c /petsc/src/snes/utils/dmsnes.c /petsc/src/sys/classes/bag/bag.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/interface/view.c /petsc/src/ts/adapt/interface/tsadapt.c /petsc/src/ts/examples/tutorials/power_grid/ex6.c /petsc/src/ts/interface/ts.c /petsc/src/ts/trajectory/impls/basic/trajbasic.c dmts.c /petsc/src/vec/vec/utils/vecio.c /petsc/src/vec/vec/utils/vinv.c
dab4423f	24-Mar-2015	Barry Smith <bsmith@mcs.anl.gov>	added shift parameter to DMDATSSetIJacobianLocal() function documentation Reported-by: Italo Tasso <italo@tasso.com.br> dmdats.c
7f6be190	24-Mar-2015	Barry Smith <bsmith@mcs.anl.gov>	updated manual pages for DMDATSSetIJacobianLocal() and DMDATSSetRHSJacobianLocal() to remove MatStructure flag Reported-by: Italo Tasso <italo@tasso.com.br> /petsc/.mailmap /petsc/ConfigureFixes.tex /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/confignightly/crank3 /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/toclapack.sh /petsc/bin/maint/wwwindex.py /petsc/bin/maint/xclude /petsc/bin/petsc-pythonscripts/PetscBinaryIO.py /petsc/bin/petsc-pythonscripts/petsclogformat.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/headers.py /petsc/config/BuildSystem/config/libraries.py 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/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /petsc/src/vec/vec/impls/seq/seqviennacl/viennaclvecimpl.h /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/ftn-custom/zvectorf.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vecreg.c /petsc/src/vec/vec/interface/vecregall.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/vecio.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vec/utils/vscat.c /petsc/src/vec/vec/utils/vsection.c /petsc/tutorials/HandsOnExercise.html
0856f4cc	21-Jan-2015	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-dmts-check' into knepley/feature-combined-tabulation * knepley/feature-dmts-check: Plex+TS: Fixed signature of DMTSCheckFromOptions() /petsc/include/petsc.h /petsc/include/petscds.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexpoint.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/snes/utils/dmplexsnes.c dmplexts.c
274e9618	21-Jan-2015	Matthew G. Knepley <knepley@gmail.com>	Plex+TS: Fixed signature of DMTSCheckFromOptions() /petsc/bin/petsc-pythonscripts/petsc_gen_xdmf.py /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtds.c dmplexts.c
3b16df42	14-Nov-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+TS: FVM RHS computation uses a global F /petsc/bin/maint/generatefortranstubs.py /petsc/bin/petsc-pythonscripts/petsc_gen_xdmf.py /petsc/config/builder.py /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petsc-private/petscfvimpl.h /petsc/include/petscdmplex.h /petsc/include/petscdt.h /petsc/include/petscfe.h /petsc/include/petscfv.h /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/impls/plex/examples/tests/ex1.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexexodusii.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgenerate.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexpoint.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/examples/tutorials/ex11.c dmplexts.c
7871a739	16-Oct-2014	Matthew G. Knepley <knepley@gmail.com>	DMTS: Add context argument to DMTSCheckFromOptions() /petsc/include/petscts.h dmplexts.c
cd45c955	16-Oct-2014	Matthew G. Knepley <knepley@gmail.com>	DMTS: DMTSCheckFromOptions() now splits the norm by field dmplexts.c
7cdb2a12	06-Oct-2014	Matthew G. Knepley <knepley@gmail.com>	DMTS: Added DMTSCheckFromOptions() - This executes a bunch of checks for the residual and Jacobian which are useful for verification /petsc/bin/maint/generatefortranstubs.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/configure.py /petsc/config/examples/arch-linux-gcc-real-env.py /petsc/config/examples/arch-osx-10.6-cxx-env.py /petsc/include/petscsnes.h /petsc/include/petscts.h /petsc/lib/petsc-conf/install.py /petsc/setup.py /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/impls/plex/ftn-custom/makefile /petsc/src/dm/impls/plex/ftn-custom/zplexgmsh.c /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/dm/impls/plex/plexlabel.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/acknowl.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/linearsolvertable.html /petsc/src/docs/website/index.html /petsc/src/docs/website/miscellaneous/external.html /petsc/src/ksp/ksp/examples/tests/ex32.c /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/examples/tests/output/ex32_cholmod.out /petsc/src/ksp/ksp/examples/tests/output/ex32_cholmod_sbaij.out /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/mat/impls/aij/seq/klu/klu.c /petsc/src/mat/impls/aij/seq/umfpack/umfpack.c /petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex19_umfpack.out /petsc/src/snes/interface/snes.c dmplexts.c /petsc/src/vec/is/sf/interface/sf.c
fe998a80	13-Jan-2015	Barry Smith <bsmith@mcs.anl.gov>	manual merge of conflict /petsc/bin/configVars.py /petsc/bin/maint/PetscStaticFunctionCandidates.py /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/generateetags.py /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/generators/matlab.py /petsc/bin/maint/toclapack.sh /petsc/bin/maint/xclude /petsc/bin/mpiexec.sshsync /petsc/bin/petsc-mpiexec.uni /petsc/bin/petsc-pythonscripts/PetscBinaryIO.py /petsc/bin/petsc-pythonscripts/PetscBinaryIO_tests.py /petsc/bin/petsc-pythonscripts/petsc_conf.py /petsc/bin/petsc-pythonscripts/petsc_gen_xdmf.py /petsc/bin/petsc-pythonscripts/petsclogformat.py /petsc/bin/petsc-pythonscripts/petscnagupgrade.py /petsc/bin/petscmpiexec /petsc/bin/portabilitycheck.py /petsc/config/BuildSystem/config/__init__.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/framework.py 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08449791	17-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+SNES+TS: Complete reorganization of residual evaluation - Now both FE and FV examples use the same method, but there are a bunch of switches which should be eliminated - There is a confusion abo Plex+SNES+TS: Complete reorganization of residual evaluation - Now both FE and FV examples use the same method, but there are a bunch of switches which should be eliminated - There is a confusion about IFunction and RHS, but I think they can both be in one function - Added DMPlexSNESGetGeometryFVM() and DMPlexSNESGetGradientFVM() - Added DMPlexGet/RestoreCellFields() and DMPlexGet/RestoreFaceFields() and DMPlexGet/RestoreFaceGeometry() - I think that FV geometry caching needs to be redone - Added DMPlexReconstructGradients_Internal() - Added DMPlexComputeBdResidual_Internal() which does not work for FV - Replaced DMPlexComputeResidualFEM_Internal() with DMPlexComputeResidual_Internal() show more ... /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petsc-private/petscfvimpl.h /petsc/include/petscdmplex.h /petsc/include/petscfv.h /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/examples/tutorials/ex11.c dmplexts.c
dcdf125b	12-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+TS: Remove use of computeGradients in favor of check for dmGrad /petsc/src/ts/examples/tutorials/ex11.c dmplexts.c
c49ccbb3	10-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+TS: Change DMPlexTSGetGradientDM() to automatically construct the gradient info, DMPlexTSSetRHSFunctionLocal() can now be replaced by the DMTS version - Remove unnecessary declarations /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petscdmplex.h /petsc/include/petscdt.h /petsc/include/petscfe.h /petsc/include/petscsnes.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/da/dalocal.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/snes/utils/dmsnes.c dmplexts.c
b6aca0f9	10-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	PetscFV+TS: Removed use of PetscCellGeometry from PetscFVIntegrateRHSFunction() - Moving toward cached geometry with arrays of structs - Changed DMPlexTSGetGeometry() to DMPlexTSGetGeometryFVM() /petsc/include/petsc-private/petscfvimpl.h /petsc/include/petscdmplex.h /petsc/include/petscfv.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtfv.c dmplexts.c
24cdb843	10-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+SNES+TS: Moved residual computation to solver utilities /petsc/include/petsc-private/dmpleximpl.h /petsc/src/dm/impls/plex/makefile /petsc/src/dm/impls/plex/plexbc.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/snes/utils/dmplexsnes.c dmplexts.c
1faf85ea	10-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	PetscFV+Plex+TS: Reorganized computation of FV geometry - Now DMPlexTSGetGeometry() computes and stashed FV geometry automatically - Moved WaxpyD, DotD, DotRealD, and NormD inside Plex - Changed Cell PetscFV+Plex+TS: Reorganized computation of FV geometry - Now DMPlexTSGetGeometry() computes and stashed FV geometry automatically - Moved WaxpyD, DotD, DotRealD, and NormD inside Plex - Changed CellGeom to PetscFVCellGeom - Changed FaceGeom to PetscFVFaceGeom - Moved DMPlexTSSetupGeometry() to DMPlexComputeGeometryFVM() - Verified using TS ex11 show more ... /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petscfv.h /petsc/src/ts/examples/tutorials/ex11.c dmplexts.c
113c68e6	10-Sep-2014	Matthew G. Knepley <knepley@gmail.com>	Plex+TS: Now the minimum cell radius is held by the Plex - Its a geometric thing that is stashed /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petsc-private/tsimpl.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/tao/examples/tutorials/ex1.c /petsc/src/ts/examples/tutorials/ex11.c dmplexts.c dmts.c
924a1b8f	29-Aug-2014	Matthew G. Knepley <knepley@gmail.com>	DMTS: Reorganized DMTS for Plex - Now FVM computation functions look just like FEM - Riemann solvers are specified to DS, just like f0/f1 - Removed explicit DMPlexTS structure, now just attach to DMT DMTS: Reorganized DMTS for Plex - Now FVM computation functions look just like FEM - Riemann solvers are specified to DS, just like f0/f1 - Removed explicit DMPlexTS structure, now just attach to DMTS - Changed DMPlexTSSetRHSFunctionLocal() - Added DMPlexTSComputeRHSFunctionFVM() - Added minradius to DMTS show more ... /petsc/config/PETSc/packages/valgrind.py /petsc/gmakefile /petsc/include/petsc-private/petscdsimpl.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petsc-private/petscfvimpl.h /petsc/include/petsc-private/tsimpl.h /petsc/include/petscdmplex.h /petsc/include/petscds.h /petsc/include/petscfe.h /petsc/include/petscfv.h /petsc/include/petscmath.h /petsc/include/petscsys.h /petsc/include/petscts.h /petsc/src/contrib/nightlysummary/runhtml.py /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmregall.c /petsc/src/docs/website/images/sarich.jpg /petsc/src/docs/website/miscellaneous/external.html /petsc/src/docs/website/miscellaneous/index.html /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/impls/lsqr/lsqr_converged.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/spai/ispai.c /petsc/src/ksp/pc/impls/tfs/xyt.c /petsc/src/mat/examples/tests/ex171.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijAssemble.cu /petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu /petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/seqcusp/aijAssemble.cu /petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu /petsc/src/snes/examples/tutorials/ex55.c /petsc/src/snes/examples/tutorials/ex70.c /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/interface/snes.c /petsc/src/snes/linesearch/impls/cp/linesearchcp.c /petsc/src/snes/linesearch/impls/l2/linesearchl2.c /petsc/src/sys/objects/ftn-custom/zstart.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/mathinf.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tseig.c dmlocalts.c dmplexts.c dmts.c /petsc/src/vec/is/examples/makefile /petsc/src/vec/is/examples/tests/ex1.c /petsc/src/vec/is/examples/tests/makefile /petsc/src/vec/is/examples/tests/output/ex1_1.out /petsc/src/vec/is/makefile /petsc/src/vec/is/sf/impls/basic/sfbasic.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu /petsc/src/vec/vec/impls/seq/seqcusp/vecscattercusp.cu
dafab42b	22-Aug-2014	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-dm-dimension-handling' * knepley/feature-dm-dimension-handling: DM: Fixed DMDASetDim() in examples Plex: Fix for isoparametric geometry Plex: Complex fix TS ex1 Merge branch 'knepley/feature-dm-dimension-handling' * knepley/feature-dm-dimension-handling: DM: Fixed DMDASetDim() in examples Plex: Fix for isoparametric geometry Plex: Complex fix TS ex11: Fixed calls to DMSetCoordinateSection() DM: FIxed DMClone() to copy dimension Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points - We evaluate isoparametrically at the quadrature points - Changed DMDAComputeCellGeometry() --> DMDAComputeCellGeometryFEM() - Changed DMPlexComputeCellGeometry() --> DMPlexComputeCellGeometryFEM() - Added DMPlexComputeCellGeometryAffineFEM() DM: Added a embedding dimension, different from the topological dimension - This can now be set in DMSetCoordinateSection(), or it can be automatically determined Plex: Fix output for ex4 DM: Added DMGetDimPoints() - This replicates DMPlex/DAGetDepthStratum(), but uses the dimension which people have said is more intuitive DM: Move dimension up into DM - Both DA and Plex had this and I think it makes sense Conflicts: src/dm/impls/plex/plexcreate.c show more ... /petsc/bin/petsclogformat.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/packages/PaStiX.py /petsc/config/PETSc/packages/cuda.py /petsc/config/PETSc/packages/openmp.py /petsc/config/PETSc/packages/pthreadclasses.py /petsc/config/PETSc/packages/threadcomm.py /petsc/include/petsc-private/dmdaimpl.h /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petsc-private/fortranimpl.h /petsc/include/petsc-private/kspimpl.h 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46e270d4	31-Jul-2014	Matthew G. Knepley <knepley@gmail.com>	DM: Added a embedding dimension, different from the topological dimension - This can now be set in DMSetCoordinateSection(), or it can be automatically determined /petsc/include/petsc-private/dmimpl.h /petsc/include/petscdm.h /petsc/include/petscdmda.h /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/dalocal.c /petsc/src/dm/impls/plex/examples/tests/output/ex4_19.out /petsc/src/dm/impls/plex/examples/tests/output/ex4_23.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/interface/dm.c dmplexts.c
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