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/honee/doc/
H A Druntime_options.md23 - Use implicit time integrator formulation
113 - Use regular refinement for VTK visualization
138 Note that to use `-continue_filename` with CGNS files, the same file must be used with `-dm_plex_fi…
219 This feature may be broken for certain use cases. If you discover a bug related to nondimensionaliz…
256 - Use wall boundary conditions on this list of faces
262 - Use weak slip boundary condition on this list of faces
265 - Use symmetry boundary conditions, for the x component, on this list of faces
268 - Use symmetry boundary conditions, for the y component, on this list of faces
271 - Use symmetry boundary conditions, for the z component, on this list of faces
274 - Use inflow boundary conditions on this list of faces
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H A Dauxiliary.md59 This also allows the use of the full domain quadrature weights for the triple integral.
80 For example, the turbulent statistics use `turbulence`.
132 To get second-order statistics from these terms, simply use the identity:
194 Note here we use the filter *diameter* instead, as that feels more natural (albeit mathematically l…
206 For inhomogeneous anisotropic filtering, we use the finite element grid itself to define $\bm{\Delt…
208 Specifically, we use the filter width tensor defined in {cite}`prakashDDSGSAnisotropic2022`.
255 To account for this, we use $\beta$ to scale the filter tensor to the appropriate size, as is done …
257 To match the box and Gaussian filters "sizes", we use $\beta = 1/10$ and $\beta = 1/6$, respectivel…
276 - Use filter width based on the grid size
291 - Damping function to use at the wall for anisotropic filtering (`none`, `van_driest`)
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H A Dtheory.md83 We use tensor-product bases $\psi_{kji} = h_i(X_0)h_j(X_1)h_k(X_2)$.
112 For the time discretization, we use two types of time stepping schemes through PETSc.
233 …a_{\bm x} \bm X$ is needed directly in finite element methods and thus more convenient for our use.
296 To make this definition compatible with higher dimensional domains, we use a similar system from th…
423 - Type of subgrid stress model to use. Currently only `data_driven` is available
454 To use the fused mode, set `-sgs_model_dd_implementation fused`.
458 The use of these external libraries allows us to leverage the flexibility of those external librari…
461 This is enabled with `USE_TORCH=1` during the build process, which will use the PyTorch accessible …
462 To specify the path to the PyTorch model file, use `-sgs_model_dd_torch_model_path`.
487 …- Which computational implementation to use for SGS DD model (`fused`, `sequential_ceed`, `sequent…
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H A Dexamples.md291 - Path to file with y node locations. If empty, will use mesh warping instead.
302 …sed for pressure in the inviscid flux terms (all other inviscid flux terms use interior solution v…
377 This overrides the `stg: use: false` setting in the `examples/blasius.yaml` file, enabling the use
521 - Use YZB discontinuity capturing
577 …They use an magnitude of one within the bubble and zero outside and have different smoothing optio…
/honee/
H A DCONTRIBUTING.md5 Please use a pull request to the appropriate branch ('release' for backward-compatible bug fixes fo…
12 This improves the efficiency of reviewing and facilitates use of [`git bisect`](https://git-scm.com…
21 Please use a real name and email for your author information (`git config user.name` and `user.emai…
29 You can use `make format` to help conform to coding conventions of the project, but try to avoid mi…
59use of HONEE (versus creation of new features in HONEE), but see the citing section and use your j…
H A DLICENSE-APACHE5 TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
9 "License" shall mean the terms and conditions for use, reproduction,
77 use, offer to sell, sell, import, and otherwise transfer the Work,
125 for use, reproduction, or distribution of Your modifications, or
126 for any such Derivative Works as a whole, provided Your use,
138 6. Trademarks. This License does not grant permission to use the trade
140 except as required for reasonable and customary use in describing the
159 result of this License or out of the use or inability to use the
192 you may not use this file except in compliance with the License.
H A DLICENSE-BSD6 Redistribution and use in source and binary forms, with or without
22 LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
24 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
H A DDoxyfile18 # Use doxygen to compare the used configuration file with the template
21 # Use doxygen to compare the used configuration file with the template
104 # documentation generated by doxygen is written. Doxygen will use this
191 # header file to include in order to use a class. If left blank only the name of
283 # with the commands \{ and \} for these it is advised to use the version @{ and
284 # @} or use a double escape (\\{ and \\})
324 # Doxygen selects the parser to use depending on the extension of the files it
325 # parses. With this tag you can assign which parser to use for a given
335 # use: inc=Fortran f=C.
337 # Note: For files without extension you can use no_extension as a placeholder.
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H A Dconf.py17 # documentation root, use os.path.abspath to make it absolute, like shown here.
111 # The name of the Pygments (syntax highlighting) style to use.
134 # The theme to use for HTML and HTML Help pages. See the documentation for
H A DREADME.md71 To test the installation, use
87 $ export CC=mpicc CXX=mpicxx # PETSc and libCEED will use these environment variables to select com…
H A Dcommon.mk15 # if TERM=dumb, use it, otherwise switch to the term one
/honee/tests/junit-xml/
H A DLICENSE.txt8 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
20 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
/honee/tests/
H A Dblasius_stgtest.yaml31 use: true
H A Dstats_test.yaml35 use: true
H A Djunit.py18 help='libCEED backend to use with convergence tests')
102 nproc (int): Number of MPI processes to use when running test case
H A Dsmartsim_regression_framework.py59 Cannot just use np.allclose due to vorticity vector directionality.
233 help='libCEED backend to use with convergence tests')
/honee/examples/
H A Dflatplate_STG.yaml59 use: true
H A Dblasius.yaml45 # use: false
H A Dconv_plot.py22 from matplotlib import use
/honee/problems/
H A Dblasius.c164 …"Use -pressure_infinity to set pressure at boundary layer edge and -idl_pressure to set the IDL re… in NS_BLASIUS()
172 …PetscCall(PetscOptionsBool("-stg_use", "Use STG inflow boundary condition", NULL, use_stg, &use_st… in NS_BLASIUS()
226 … PETSC_ERR_ARG_INCOMP, "Can only use conservative variables with Blasius and weak inflow"); in NS_BLASIUS()
H A Dshocktube.c67 …PetscCall(PetscOptionsBool("-implicit", "Use implicit (IFunction) formulation", NULL, implicit = P… in NS_SHOCKTUBE()
70 …PetscCall(PetscOptionsBool("-yzb", "Use YZB discontinuity capturing", NULL, yzb = PETSC_FALSE, &yz… in NS_SHOCKTUBE()
H A Deulervortex.c108 …PetscCall(PetscOptionsBool("-implicit", "Use implicit (IFunction) formulation", NULL, implicit = P… in NS_EULER_VORTEX()
116 PetscCall(PetscPrintf(comm, "Warning! Use -stab supg only with -implicit\n")); in NS_EULER_VORTEX()
/honee/qfunctions/
H A Dadvection_types.h47 ADVDIF_BUBBLE_CONTINUITY_COSINE = 3, // Use cosine wave for smoothing
/honee/src/
H A Dhonee-meshtransform.c138 Use the option `-mesh_transform` to determine the type of mesh transformation to apply
176 "If empty, will use the algorithmic mesh warping.", in HoneeMeshTransformFromOptions()
H A Dinverse_multiplicity.c20 …* @param[out] elem_restr_inv_multiplicity `CeedElemRestriction` needed to use the multiplicity vec…

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