Merge pull request #1197 from sebastiangrimberg/sjg/style-whitespace-fix

Minor style consistency updates

internal - add CeedCheck macro to reduce repetition

Enforce include order in .clang-format

Fix file endings inconsistency

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc heade

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc headers

* iwyu - ceed/ceed.h -> ceed.h

* iwyu - cuda/hip include fixes

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Merge pull request #1172 from CEED/jeremy/more-tests

Spelling and Ceed example consistency

gpu - add missing backend impl method link

Adding CeedVectorCopy() and CeedVectorAXPBY() (#1170)

* adding CeedVectorAXPBY and CeedVectorCopy functions with Rust, Python, and CUDA/HIP backend support

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Co-authored-by: James Wrig

Adding CeedVectorCopy() and CeedVectorAXPBY() (#1170)

* adding CeedVectorAXPBY and CeedVectorCopy functions with Rust, Python, and CUDA/HIP backend support

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Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Adeleke O. Bankole <86932837+AdelekeBankole@users.noreply.github.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>

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spelling - spelling fixes in core

pc - fix read/write access logic for full assembly

minor - assorted formatting fixes

Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - re

Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - remove stray newline

* make - simpler 'make format' target

* ci - use newer libxsmm

* doc - minor release note claification

* minor - minor fix

* minor - minor fix

* minor - minor fix

* minor - minor fix

* make format

* format - less aggressive alignment rules

* tidy - check for argument name mismatches

* fix newline

* format - mirror Ratel update to .clang-format

* fix merge error

* fix merge conflict

* fix merge error

* drop style in .phony list

* Update .clang-format

Co-authored-by: Jed Brown <jed@jedbrown.org>

* apply updated format

Co-authored-by: Jed Brown <jed@jedbrown.org>

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Update error for multi-field diagonal assembly (#1089)

* Update error for multi-field diagonal assembly

* update error message for multi-field non-composite operator assembly

minor - clearer GPU QF/Op kernel names

Refactor `cuda-gen` and `hip-gen` backends. (#1050)

* Add TODO items.

* rough, but something like this?

* wip - cleaning up some warnings, but more remain

* wip - reorganize

* wip - miss

Refactor `cuda-gen` and `hip-gen` backends. (#1050)

* Add TODO items.

* rough, but something like this?

* wip - cleaning up some warnings, but more remain

* wip - reorganize

* wip - missing kernels

* wip - replace t1d

* fix some kernels

* another typo

* more

* another one

* closer

* define T_1D

* typosgit add .!

* WIP: changes to cuda-shared framework for new kernels

* fix output writing

* buffer fix

* buffer sizes

* WIP: fixes for 2 and 3D basis kernels

* minor

* fix weight kernel for 3d

* remove debugging output

* minor reorg

* fix includes

* enable collo grad for cuda-shared

* move quoted kernels

* renaming

* missed a rename

* small fix

* more naming consistency

* faster 'useCollograd=false' path in *-gen

* more style

* one last style fix

* clearer collograd condition

* Add gen basis kernels to hip-shared

* Try some changes to hip-shared basis block sizes for new kernels

* cuda - drop extra kernel arg

* cuda - fix collograd check logic

* update gen comment about parallelization

* tidy up fields struct definition

* tidy up structs even more

* Update hip-gen basis templates use and move other hip-gen device functions to jit-source

* Finish hip-gen basis template update; small style updates to match CUDA

* missing isStrided

* Update block size used in 3D weight for new shared kernels

* update release notes

Co-authored-by: Jeremy L Thompson <jeremy@jeremylt.org>
Co-authored-by: nbeams <246972+nbeams@users.noreply.github.com>

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QF headers for typedefs and macros (#1036)

* jit - qf headers for typedefs and macros

* jit - smaller list of permitted files

* ceed - only include ceed.h in QF source

Merge pull request #1003 from CEED/release

Update main with bugfix

Merge branch 'main' into jeremy/assembly-fix

gpu - fix setting device id

CeedOperatorAssemblePointBlockDiagonal: fix restriction sizes for subdomain integrals

Formerly would give errors such as

interface/ceed-elemrestriction.c:862 in CeedElemRestrictionApply(): Output v

CeedOperatorAssemblePointBlockDiagonal: fix restriction sizes for subdomain integrals

Formerly would give errors such as

interface/ceed-elemrestriction.c:862 in CeedElemRestrictionApply(): Output vector size 125050 not compatible with element restriction (124050, 6000)

(noted in https://github.com/CEED/libCEED/pull/994#discussion_r899808040)

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gpu - fix restriction CEED_COPY_VALUES + CEED_MEM_HOST

pc - drop qf value thresholding in assembly

Fix assembly for operators with size zero

This occurs in parallel when some processes have zero elements in a
subdomain or part of the boundary.

pc - fix GPU single operator fallback

pc - fix fallback for composite assembly