fixed up formatting of references in manualpages to consistent styleReferences:+ 1. - ref1. 2. - ref2- 3. - ref3previously the formatting was varied and ugly
Merge branch 'master' into barry/petscoptions-object
Begin renaming the PetscOptions objects for the future where PetscOptions will not be a singleton
remove fatol and frtol concept from Tao; they are redundant and confusing compared to other tolerances
Merge branch 'sarich/fix-tao-default-options-guards'
add boolean guards to check if tao default options have been changed
Merge branch 'sarich/feature-tao-iteration-count'
Correct the monitor iteration counter
Set the options prefix correctly on tao->ksp and tao->linesearch.
add accessors to tao iteration counter, tao total iteration count
fixed missing CHKERRQ() detected by clang's --analyze
updated PETSc directory layout to match standard packaging strategiesinclude/petsc finclude,private,mpiunilib/petsc confbin/petsc*
fix some TAO source code formatting
simplify option object names
updated new XXXSetFromOptions_YYY() methods to take PetscOptionsObjectType
manual merge of conflict
Merge branch 'barry/fix-options-default'Conflicts: src/ksp/ksp/examples/tutorials/ex52.c
cleanup of use of PetscOptionsInt and friends including use of flag final argument
removed Tao use of antediluvian PETSC_C_BEGIN/END with PETSC_EXTERN for Tao implementation class constructors
correct ksp counting complementarity and ipm solvers
docs: fix errors of type:manualpages in: /sandbox/petsc/petsc.clone/src/tao/unconstrained/impls/nlsmake[7]: [manualpages] Error 1 (ignored)
tao: documentation update
add a tao solver page to man pages for each solver (could be filled in a bit more)
removed unneeded includes in include filesadded findvisibleprivatefunctions for finding symbols in libraries that might not belongremoved a couple of global symbolsnamed spaced a couple of Tao fun
removed unneeded includes in include filesadded findvisibleprivatefunctions for finding symbols in libraries that might not belongremoved a couple of global symbolsnamed spaced a couple of Tao functions
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removed MatStructure arguments from Tao
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