seqcusparse - OpenGrok history log for /petsc/src/mat/impls/aij/seq/seqcusparse

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
dced61a5	28-Aug-2015	Barry Smith <bsmith@mcs.anl.gov>	We need to product all the CUDA code from the spinlock definitions since the CUDA compiler crashes on them /petsc/.mailmap /petsc/bin/maint/buildtest /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/dos/buildntdist /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/jenkins/jenkins_configure.sh /petsc/bin/maint/jenkins/jenkins_make.sh /petsc/bin/maint/jenkins/jenkins_test.sh /petsc/bin/maint/rebuildtar /petsc/bin/maint/update-docs.py /petsc/bin/maint/xclude /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petscmpiexec /petsc/bin/sendToJenkins /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py 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af0996ce	11-Apr-2015	Barry Smith <bsmith@mcs.anl.gov>	updated PETSc directory layout to match standard packaging strategies include/petsc finclude,private,mpiuni lib/petsc conf bin/petsc* /petsc/.mailmap /petsc/ConfigureFixes.tex /petsc/bin/PetscBinaryIO.py /petsc/bin/PetscBinaryIO_tests.py /petsc/bin/configVars.py /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/confignightly/crank3 /petsc/bin/maint/generateetags.py /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/generators/matlab.py /petsc/bin/maint/submitPatch.py /petsc/bin/maint/toclapack.sh /petsc/bin/maint/wwwindex.py /petsc/bin/maint/xclude /petsc/bin/mpiexec.sshsync /petsc/bin/petsc_conf.py /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petsclogformat.py /petsc/bin/petscmpiexec /petsc/bin/petscnagupgrade.py /petsc/bin/portabilitycheck.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerFlags.py 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8c34d3f5	20-Jan-2015	Barry Smith <bsmith@mcs.anl.gov>	simplify option object names /petsc/config/BuildSystem/config/packages/openmp.py /petsc/config/BuildSystem/config/packages/openmpclasses.py /petsc/config/PETSc/options/libraryOptions.py /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/kspimpl.h /petsc/include/petsc-private/linesearchimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petsc-private/pcimpl.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petsc-private/sfimpl.h /petsc/include/petsc-private/snesimpl.h /petsc/include/petsc-private/taoimpl.h /petsc/include/petsc-private/taolinesearchimpl.h /petsc/include/petsc-private/tsimpl.h /petsc/include/petsc-private/vecimpl.h /petsc/include/petsc-private/viewerimpl.h /petsc/include/petscoptions.h /petsc/include/petscts.h /petsc/include/petscvec.h /petsc/include/petscviewer.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tests/makefile /petsc/src/dm/impls/da/dacreate.c 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e55864a3	08-Nov-2013	Barry Smith <bsmith@mcs.anl.gov>	moved PetscOptionsObject from global variable to local variable in functions /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/configure.py /petsc/config/examples/arch-linux-gcc-real-env.py /petsc/config/examples/arch-osx-10.6-cxx-env.py /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/kspimpl.h /petsc/include/petsc-private/linesearchimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petsc-private/pcimpl.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petsc-private/sfimpl.h /petsc/include/petsc-private/snesimpl.h /petsc/include/petsc-private/tsimpl.h /petsc/include/petsc-private/vecimpl.h /petsc/include/petsc-private/viewerimpl.h /petsc/include/petscoptions.h /petsc/include/petscts.h /petsc/include/petscvec.h /petsc/include/petscviewer.h /petsc/lib/petsc-conf/install.py /petsc/setup.py /petsc/src/dm/dt/interface/dtfe.c 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854ce69b	15-Nov-2014	Barry Smith <bsmith@mcs.anl.gov>	convert some PetscMalloc() to PetscMalloc1() remove unneeded () in first argument to PetscMalloc/Calloc1() fixes for MATLAB examples /petsc/bin/petscnagupgrade.py /petsc/config/PETSc/Regression.py /petsc/include/petscbt.h /petsc/include/petscsys.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tests/ex8.c /petsc/src/dm/examples/tests/makefile /petsc/src/dm/examples/tutorials/ex1.c /petsc/src/dm/examples/tutorials/ex6.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/da.c /petsc/src/dm/impls/da/da1.c /petsc/src/dm/impls/da/dadd.c /petsc/src/dm/impls/da/dagetelem.c /petsc/src/dm/impls/da/dainterp.c /petsc/src/dm/impls/da/daltol.c /petsc/src/dm/impls/da/dapreallocate.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/da/usfft/matusfft.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexgenerate.c 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81e08676	11-Nov-2014	Barry Smith <bsmith@mcs.anl.gov>	Merge branch 'barry/dynamic-matsolverpackageregister' Conflicts: src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/include/petscblaslapack.h /petsc/include/petscmat.h /petsc/src/mat/impls/aij/mpi/clique/clique.cxx /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aijfact.c /petsc/src/mat/impls/aij/seq/essl/essl.c /petsc/src/mat/impls/aij/seq/lusol/lusol.c /petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c /petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c /petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu aijcusparse.cu /petsc/src/mat/impls/aij/seq/superlu/superlu.c /petsc/src/mat/impls/aij/seq/umfpack/umfpack.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baijfact.c /petsc/src/mat/impls/dense/mpi/mpidense.h /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/elemental/matelem.cxx /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matrix.c /petsc/src/sys/objects/pname.c /petsc/src/vec/vec/utils/matlab/gcreatev.c
f896727a	11-Nov-2014	Karl Rupp <rupp@iue.tuwien.ac.at>	Merge branch 'dmeiser/pullrequest-fix-dmda-cusparse' dmeiser/pullrequest-fix-dmda-cusparse: The general problem addressed here is that multiple calls to MatAssemblyBegin() / MatAssemblyEnd() pai Merge branch 'dmeiser/pullrequest-fix-dmda-cusparse' dmeiser/pullrequest-fix-dmda-cusparse: The general problem addressed here is that multiple calls to MatAssemblyBegin() / MatAssemblyEnd() pairs on the same matrix were treated as an error. Conflicts: src/ksp/ksp/examples/tutorials/makefile src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu show more ... /petsc/config/BuildSystem/config/package.py /petsc/config/PETSc/options/arch.py /petsc/src/dm/interface/dm.c /petsc/src/ksp/ksp/examples/tutorials/ex46.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex46_aijcusp.out /petsc/src/ksp/ksp/examples/tutorials/output/ex46_aijcusparse.out /petsc/src/ksp/ksp/impls/cg/cgeig.c /petsc/src/ksp/ksp/interface/itfunc.c aijcusparse.cu
1f0d623c	10-Nov-2014	Karl Rupp <rupp@iue.tuwien.ac.at>	Merge branch 'dmeiser/pullrequest-fix-PetscOptionsEnum2' dmeiser/pullrequest-fix-PetscOptionsEnum2: The currently set value for the various options is used rather than a hard wired value. Conflic Merge branch 'dmeiser/pullrequest-fix-PetscOptionsEnum2' dmeiser/pullrequest-fix-PetscOptionsEnum2: The currently set value for the various options is used rather than a hard wired value. 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29b38603	10-Nov-2014	Barry Smith <bsmith@mcs.anl.gov>	properly extern "C"ing MatSolverPackage registration functions /petsc/include/petscmat.h /petsc/src/mat/impls/aij/mpi/clique/clique.cxx /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/essl/essl.c /petsc/src/mat/impls/aij/seq/lusol/lusol.c /petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c /petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c aijcusparse.cu /petsc/src/mat/impls/aij/seq/superlu/superlu.c /petsc/src/mat/impls/aij/seq/umfpack/umfpack.c /petsc/src/mat/impls/elemental/matelem.cxx /petsc/src/mat/interface/matrix.c /petsc/src/vec/vec/utils/matlab/gcreatev.c
0f39cd5a	08-Nov-2014	Barry Smith <bsmith@mcs.anl.gov>	cleanup for cuda builds where nvcc is not in the path fixes for cusparse solver with new organization of registration of solver packages /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu aijcusparse.cu /petsc/src/mat/interface/dlregismat.c
42c9c57c	07-Nov-2014	Barry Smith <bsmith@mcs.anl.gov>	Moved registration of MatSolverPackages out of MatCreate_XXX routines into standalone system, this allows 1) more precise error message when a requested solver is not found 2) easier to add new solve Moved registration of MatSolverPackages out of MatCreate_XXX routines into standalone system, this allows 1) more precise error message when a requested solver is not found 2) easier to add new solvers without touching basic PETSc matrix implementation files and the possibility of adding new solvers to the library after PETSc is installed or even at run time show more ... /petsc/bin/maint/generateetags.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hwloc.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/ml.py 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ce814652	15-Oct-2014	Dominic Meiser <dmeiser@txcorp.com>	Release resources before resetting for aijcusparse matrices. This fixes src/ksp/ksp/examples/tutorials/ex46.c with -mat_type aijcusparse. aijcusparse.cu
ab25e6cb	15-Oct-2014	Dominic Meiser <dmeiser@txcorp.com>	Simplify resource deallocation in MatSeqAIJCUSPARSE_Destroy. aijcusparse.cu
7f756511	15-Oct-2014	Dominic Meiser <dmeiser@txcorp.com>	Add functions for deallocating aijcusparse data structures. /petsc/bin/configVars.py /petsc/bin/maint/builddist /petsc/bin/maint/generateetags.py /petsc/bin/pythonscripts/petsc_gen_xdmf.py /petsc/conf/install.py /petsc/config/BuildSystem/config/__init__.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/SuperLU_MT.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/Zoltan.py 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56df9bba	16-Oct-2014	Karl Rupp <rupp@iue.tuwien.ac.at>	Merge branch 'dmeiser/pullrequest-fix-cusp-bjacobi2' (pull request #178) * dmeiser/pullrequest-fix-cusp-bjacobi2: small bug fixes and typos, test cases that exercise the bjacobi preconditioner w Merge branch 'dmeiser/pullrequest-fix-cusp-bjacobi2' (pull request #178) * dmeiser/pullrequest-fix-cusp-bjacobi2: small bug fixes and typos, test cases that exercise the bjacobi preconditioner with cusp and cusparse solvers, removal of cudaMemcpyAsync (and the cudaHostRegister/cudaHostUnregister), and replacement of VecGetArray/VecSetArray calls in PCApply_BJacobi_Singleblock with a new vector method VecGetLocalVector Conflicts: include/petsc-private/vecimpl.h src/vec/vec/impls/seq/seqcusp/veccusp.cu src/vec/vec/utils/vpscat.h show more ... /petsc/bin/configVars.py /petsc/bin/maint/builddist /petsc/bin/maint/generateetags.py /petsc/bin/pythonscripts/petsc_gen_xdmf.py /petsc/conf/install.py /petsc/config/BuildSystem/config/__init__.py 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a183c035	13-Oct-2014	Dominic Meiser <dmeiser@txcorp.com>	Use current value for default in PetscOptionsEnum(). In options handling for matrices of type: seqcusp seqcusparse mpicusp mpicusparse /petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu /petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu /petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu aijcusparse.cu
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33d57670	15-Feb-2014	Jed Brown <jed@jedbrown.org>	Mat & Vec: make block sizes lazy In the past, MatSetUp eagerly set the block sizes (to 1) if not already set. This prevents use of the "convenience" constructors because they call MatSetUp before r Mat & Vec: make block sizes lazy In the past, MatSetUp eagerly set the block sizes (to 1) if not already set. This prevents use of the "convenience" constructors because they call MatSetUp before returning. We could add bs as an explicit argument to those constructors, but block size is an extraneous concept for most users. The default value of the block size is -1, so now we use PetscAbs(map->bs) anywhere it is not known in advance that bs has been explicitly set. This allows block sizes to be lazy, and they can be set arbitrarily late, so long as the new size is compatible with the existing distribution. For (S)BAIJ matrices, the block size is structural so it gets set explicitly and can thus be referenced directly rather than via MatGetBlockSize or wrapped in PetscAbs. show more ... /petsc/.gitignore /petsc/bin/maint/generateetags.py /petsc/bin/maint/generatefortranstubs.py /petsc/bin/maint/toclapack.sh /petsc/bin/matlab/classes/matlabheader.h /petsc/conf/gmakegen.py /petsc/conf/rules /petsc/conf/variables /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/Chaco.py /petsc/config/builder.py /petsc/config/cmakegen.py /petsc/gmakefile /petsc/include/finclude/ftn-custom/petscdmda.h90 /petsc/include/finclude/makefile /petsc/include/finclude/petsc.h /petsc/include/finclude/petsc.h90 /petsc/include/finclude/petscdm.h /petsc/include/finclude/petscdmda.h /petsc/include/finclude/petscdmdadef.h /petsc/include/finclude/petscdmdef.h /petsc/include/finclude/petsckspdef.h 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/petsc/src/vec/vec/examples/tests/ex43.c /petsc/src/vec/vec/examples/tests/ex44.c /petsc/src/vec/vec/examples/tutorials/ex1.c /petsc/src/vec/vec/examples/tutorials/ex18.c /petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu /petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/nest/vecnest.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/makefile /petsc/src/vec/vec/utils/projection.c /petsc/src/vec/vec/utils/vecmpitoseq.c /petsc/src/vec/vec/utils/vinv.c
3d13b8fd	03-Feb-2014	Matthew G. Knepley <knepley@gmail.com>	Fix include format /petsc/bin/FASTMathInstaller.py /petsc/bin/maint/asterix-test.sh /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/churn2 /petsc/bin/maint/confignightly/crush3 /petsc/bin/maint/getinterfaces.py /petsc/bin/maint/package-test.sh /petsc/bin/maint/petsc-val.supp /petsc/bin/petsclogformat.py /petsc/bin/petscmpiexec /petsc/bin/pythonscripts/PetscBinaryIO.py /petsc/bin/pythonscripts/petsc_conf.py /petsc/conf/rules /petsc/conf/test /petsc/conf/variables /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/retrieval.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/package.py /petsc/config/PETSc/packages/c2html.py /petsc/config/PETSc/packages/cmake.py /petsc/config/PETSc/packages/ctetgen.py /petsc/config/PETSc/packages/lgrind.py /petsc/config/PETSc/packages/sowing.py /petsc/config/PETSc/packages/spai.py /petsc/config/PETSc/packages/viennacl.py /petsc/config/PETSc/utilities/Regression.py 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785e854f	03-Dec-2013	Jed Brown <jedbrown@mcs.anl.gov>	Sys: add PetscMalloc1 macro, array allocation without redundant types The type is inferred from the pointer return type. This patch is automated via the following script: git grep -l 'PetscMalloc( Sys: add PetscMalloc1 macro, array allocation without redundant types The type is inferred from the pointer return type. This patch is automated via the following script: git grep -l 'PetscMalloc(.sizeof' src \| xargs perl -pi -e 's@PetscMalloc$([^,;][^,; ]) \ *sizeof\([^,;()]+$,@PetscMalloc1($1,@' This commit contains an additional bug-fix in csrperm.c, fixing pointer arity. The code was introduced in 2006, but the allocation could not have been correct at any time. This probably means that MatDuplicate_SeqAIJPERM has never been tested. a54129beb540034ba105796c682d589e7e1111f2 Richard Tran Mills <rmills@ornl.gov> Added MATSEQCSRPERM support for MatDuplicate() and conversion to/from MATSEQAIJ. 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aed5ffcb	05-Aug-2013	Karl Rupp <rupp@iue.tuwien.ac.at>	Merge branch 'paulmullowney/txpetscgpu-package-removal2' /petsc/.mailmap /petsc/bin/maint/builddist /petsc/bin/matlab/PetscBagRead.m /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/programs.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/Zoltan.py /petsc/config/PETSc/packages/cmake.py /petsc/config/PETSc/packages/elemental.py /petsc/config/PETSc/packages/scalapack.py /petsc/config/PETSc/packages/sundials.py /petsc/config/examples/arch-cuda-cg-opt.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda5-cg-opt.py /petsc/include/finclude/petscmat.h /petsc/include/finclude/petscpc.h /petsc/include/petsc-private/bagimpl.h /petsc/include/petsc-private/dmimpl.h 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a65300a6	31-Jul-2013	Paul Mullowney <paulm@txcorp.com>	Fix to aijcusparse for ell/hyb matrices in Multi-GPU MatMult The parameters of the matrix (i.e. the number of rows) were not being set correctly in a parallel (Multi-GPU) MatMult for Ell/Hyb matrix Fix to aijcusparse for ell/hyb matrices in Multi-GPU MatMult The parameters of the matrix (i.e. the number of rows) were not being set correctly in a parallel (Multi-GPU) MatMult for Ell/Hyb matrix storage formats. In particular, the offdiagonal component matrix used in MatMultAdd had the number of rows set incorrectly. The existing test, src/ksp/ksp/examples/tests/ex43 (runex43_5) only set the diagonal component to be in non-csr format so this wasn't caught earlier. D'oh. I have checked all combinations of storage formats on ksp/ksp/examples/tutorials/ex2.c. Results are entirely consistent in serial and parallel and are tested on CUDA 5.0(2070, Fermi) and CUDA 4.2 (1060, Tesla) architectures. show more ... /petsc/config/examples/arch-cuda-cg-opt.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda5-cg-opt.py aijcusparse.cu
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