Man pages: remove Concepts: fieldsThese fields were previously stripped from the man pages by logic removed in 21a59cba2737d49dc2f0bd12c08db0d2a3f3f209Remove these fields from all man pages (but
Man pages: remove Concepts: fieldsThese fields were previously stripped from the man pages by logic removed in 21a59cba2737d49dc2f0bd12c08db0d2a3f3f209Remove these fields from all man pages (but not from examples).This is accomplished with GNU sed (gsed on OS X), with the following commands.*Warning* that this type of command can corrupt a .git directory,so be cautious in reusing or modifying these commands. They first lookfor and delete matching lines with a following line consisting of only whitespace,and then delete any remaining matching lines. find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} + find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} + find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} + find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
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Man pages: remove .keywords: fieldsThis field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),but it doesn't seem to be unif
Man pages: remove .keywords: fieldsThis field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),but it doesn't seem to be uniformly used or maintained.Thus, remove all .keywords: fields, and a following blank line, if present.This is accomplished with GNU sed (gsed on OS X), with the following commands.*Warning* that this type of command can corrupt a .git directory,so be cautious in reusing or modifying these commands. They first lookfor and delete matching lines with a following line consisting of only whitespace,and then delete any remaining matching lines. find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} + find src/ -type f -exec gsed -i '/keywords:/d' {} + find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} + find include/ -type f -exec gsed -i '/keywords:/d' {} +Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
Fixes for begining of users manual and a variety of webpages including manual pagesCommit-type: bug-fix, documentation
Add if (*ierr) return checks for all Fortran stubs that utilize FREECHAR()Otherwise the ierr is overwritten by the FREECHAR() thus returning a zero error code when it should notCommit-type: bug-f
Add if (*ierr) return checks for all Fortran stubs that utilize FREECHAR()Otherwise the ierr is overwritten by the FREECHAR() thus returning a zero error code when it should notCommit-type: bug-fixReported-by: Tim Steinhoff <kandanovian@gmail.com>
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommi
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommit-type: style-fixReported-by: Jed Brown <jed@jedbrown.org>Thanks-to: Fande Kong <fande.kong@inl.gov>
Merge branch 'maint'
openmpi: fix namespace conflict [with static build on ppc64le]
Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log appl
Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log apply-on-blocks KSP solves- Rename PetscLogDestroy() -> PetscLogFinalize() and hide it from the API
Update tester of mathematica link to handle errors the modern wayCommit-type: testing-fix,style-fix
examples: add compile target 'ex%: ex%.o' etc - and remove the corresponding dups
Man pages: add newlines after "Notes:"This allows for proper formatting from sowing.On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \(
Man pages: add newlines after "Notes:"This allows for proper formatting from sowing.On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( -name "*.c" -or -name "*.h" -or -name "*.cxx" \) | xargs gsed -i 's/Notes\s*:\s*\(\w.*\)/Notes:\n \1/'This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'* origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm:
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'* origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: silence static analyzer warning PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM DMField: default initialization of variable PetscFE: fix integration for openCL PetscFEGeomComplete(): correct normal vector in 2D. DMField: c++/complex fixes DMField: empty processor protections DMField regression test fixes DMLabel: try to keep stride IS as stride IS as much as possible DMPlexRefine(): create depth before hybrid-bounded label DMField: documentation of interface DMField: implement shell DMPlex: rename newly created label ...Conflicts: src/dm/dt/interface/dtfe.c src/snes/examples/tutorials/ex69.c src/snes/utils/dmplexsnes.c
Consistent handling of command line options -info_exclude and -log_exclude
DMField: c++/complex fixes
cleanup PETSC_DESIRE_FEATURE_TEST_MACROSCommit-type: style-fix
Decrease sample size for random number testing to prevent > 10 minutes with gcov testsCommit-type: testing-fixReported-by: nightly tests
fix random/ex2 (complex) and missing output file warning
Added two test output files I had accidently not put in git when converting to new harnessCommit-type: i.e. bug-fix, testing-fixReported-by: Satish Balay <balay@mcs.anl.gov>
convert another directory over to the new test harnessCommit-type: testing-fix
remove dead test code from makefile, fix new test harness code to actually work on the example portablyCommit-type: bug-fix, portability-fix, testing-fix
fix formatting of manual pageCommit-type: documentationReported-by: Jaroslaw Piwonski <jpi@informatik.uni-kiel.de>
PetscRandom tests ex3: fix size calculation to PetscInt64
PetscRandomView(): use `%ul` for unsigned long
PetscRandom: change test ex3 to work on 32-bit systems
nightlybuild fixes
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